Variant report

Variant	rs1057175
Chromosome Location	chr10:95551951-95551952
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12243032	0.83[AMR][1000 genomes]
rs12249862	0.83[AMR][1000 genomes]
rs12264508	0.83[AMR][1000 genomes]
rs12266513	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1840973	chr10:95534265-95552953	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv551945	chr10:95545536-95552653	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:95546800-95552400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:95547000-95555200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:95549000-95552400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:95549000-95552600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:95550600-95552600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:95550800-95552600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:95550800-95552600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:95550800-95556200	Weak transcription	Aorta	Aorta
13	chr10:95551000-95552600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:95551000-95552600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:95551000-95553200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:95551000-95563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:95551200-95552000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:95551200-95552200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:95551400-95555200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:95551600-95553000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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