Variant report

Variant	rs12264508
Chromosome Location	chr10:95554073-95554074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1057175	0.83[AMR][1000 genomes]
rs12243032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255855	0.91[AFR][1000 genomes]
rs12266513	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150346	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:95547000-95555200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:95550800-95556200	Weak transcription	Aorta	Aorta
7	chr10:95551000-95563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:95551400-95555200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:95552400-95554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:95552400-95554400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:95552600-95554600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:95552600-95563600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:95552800-95555600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:95553200-95556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:95553200-95558800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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