Variant report

Variant	rs1057743
Chromosome Location	chr1:149900957-149900958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35487277	1.00[LWK][hapmap]
rs35610719	1.00[LWK][hapmap]
rs3818872	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149899000-149901000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:149900000-149903800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
3	chr1:149900000-149904400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr1:149900200-149901000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:149900200-149901000	Flanking Active TSS	Dnd41	blood
6	chr1:149900200-149901800	Enhancers	Spleen	Spleen
7	chr1:149900400-149901000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:149900400-149901000	Enhancers	Small Intestine	intestine
9	chr1:149900400-149901200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:149900400-149901200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:149900400-149901400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:149900400-149901400	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:149900400-149901400	Weak transcription	Aorta	Aorta
14	chr1:149900400-149901600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:149900400-149901600	Weak transcription	Ovary	ovary
16	chr1:149900400-149903600	Weak transcription	Lung	lung
17	chr1:149900400-149903800	Weak transcription	Gastric	stomach
18	chr1:149900400-149906400	Genic enhancers	Fetal Intestine Small	intestine
19	chr1:149900400-149907800	Weak transcription	Esophagus	oesophagus
20	chr1:149900400-149907800	Weak transcription	Pancreas	Pancrea
21	chr1:149900400-149908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:149900600-149901000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:149900600-149901000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:149900600-149901000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:149900600-149901000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr1:149900600-149901000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:149900600-149901000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:149900600-149901000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:149900600-149901000	Enhancers	Brain Angular Gyrus	brain
30	chr1:149900600-149901000	Genic enhancers	Fetal Lung	lung
31	chr1:149900600-149901000	Weak transcription	NHDF-Ad	bronchial
32	chr1:149900600-149901200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:149900600-149901200	Enhancers	Primary T cells from cord blood	blood
34	chr1:149900600-149901200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr1:149900600-149901200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:149900600-149901200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:149900600-149901200	Weak transcription	NHLF	lung
38	chr1:149900600-149901400	Enhancers	Primary hematopoietic stem cells	blood
39	chr1:149900600-149901400	Weak transcription	Osteobl	bone
40	chr1:149900600-149901600	Enhancers	Primary B cells from cord blood	blood
41	chr1:149900600-149901600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:149900600-149901600	Enhancers	Fetal Thymus	thymus
43	chr1:149900600-149901600	Enhancers	Stomach Mucosa	stomach
44	chr1:149900600-149901800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:149900600-149901800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr1:149900600-149901800	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:149900600-149902800	Enhancers	HSMMtube	muscle
48	chr1:149900600-149903800	Genic enhancers	Fetal Muscle Leg	muscle
49	chr1:149900600-149906200	Genic enhancers	Fetal Intestine Large	intestine
50	chr1:149900600-149906200	Weak transcription	Left Ventricle	heart

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