Variant report

Variant	rs35487277
Chromosome Location	chr1:149894517-149894518
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149819700..149822457-chr1:149894448..149896708,2	K562	blood:
2	chr1:149892424..149896028-chr1:150130993..150134075,3	K562	blood:
3	chr1:149892343..149895207-chr1:150206922..150209080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143401	Chromatin interaction
ENSG00000203819	Chromatin interaction
ENSG00000261716	Chromatin interaction
ENSG00000023902	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1057743	1.00[LWK][hapmap]
rs35610719	1.00[LWK][hapmap]
rs3818872	1.00[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149889400-149894600	Weak transcription	Gastric	stomach
2	chr1:149889400-149894600	Weak transcription	Pancreas	Pancrea
3	chr1:149889400-149894600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:149889400-149894600	Weak transcription	HMEC	breast
5	chr1:149889400-149894800	Weak transcription	Esophagus	oesophagus
6	chr1:149889400-149894800	Weak transcription	HSMMtube	muscle
7	chr1:149889600-149894600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:149889600-149895200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:149889800-149894600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:149889800-149894600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:149889800-149894600	Weak transcription	Lung	lung
12	chr1:149889800-149894600	Weak transcription	Spleen	Spleen
13	chr1:149889800-149895200	Weak transcription	Colonic Mucosa	Colon
14	chr1:149889800-149895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:149889800-149895400	Weak transcription	Aorta	Aorta
16	chr1:149889800-149896400	Weak transcription	Fetal Heart	heart
17	chr1:149890000-149894600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:149890000-149894600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:149890000-149894600	Weak transcription	Brain Substantia Nigra	brain
20	chr1:149890000-149894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:149890000-149894800	Weak transcription	Fetal Kidney	kidney
22	chr1:149890000-149896200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:149890000-149898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:149890200-149894800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:149890200-149895200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:149890400-149894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:149890400-149894600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:149890400-149894600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:149890400-149895000	Weak transcription	Fetal Lung	lung
30	chr1:149890400-149895200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:149890400-149895400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:149890400-149897600	Weak transcription	Fetal Brain Male	brain
33	chr1:149890600-149894600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr1:149890600-149894600	Weak transcription	Fetal Intestine Small	intestine
35	chr1:149890600-149894600	Weak transcription	NHEK	skin
36	chr1:149890600-149896400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr1:149890800-149898000	Weak transcription	Stomach Mucosa	stomach
38	chr1:149891000-149894600	Weak transcription	Brain Angular Gyrus	brain
39	chr1:149891000-149894600	Weak transcription	HUVEC	blood vessel
40	chr1:149891000-149894800	Weak transcription	Brain Germinal Matrix	brain
41	chr1:149891200-149894600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:149891600-149896400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:149892600-149895400	Weak transcription	Psoas Muscle	Psoas
44	chr1:149892600-149897200	Strong transcription	Primary T cells from cord blood	blood
45	chr1:149892800-149894600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:149892800-149897200	Strong transcription	Fetal Stomach	stomach
47	chr1:149893000-149897600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:149893400-149897600	Strong transcription	HSMM	muscle
49	chr1:149893400-149898200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:149893400-149898200	Strong transcription	Thymus	Thymus

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