The 2.0 version of rSNPBase

Variant report

Variant rs105924
Chromosome Location chr6:11730059-11730060
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:11710800-11731000 Weak transcription Gastric stomach
2 chr6:11711200-11731000 Weak transcription Fetal Intestine Small intestine
3 chr6:11711600-11731800 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr6:11714600-11731600 Weak transcription Small Intestine intestine
5 chr6:11719400-11762200 Weak transcription Colonic Mucosa Colon
6 chr6:11719600-11732400 Weak transcription NHEK skin
7 chr6:11723200-11731600 Strong transcription HSMM muscle
8 chr6:11723200-11732400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr6:11723200-11738400 Weak transcription HMEC breast
10 chr6:11723600-11744200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr6:11723800-11730600 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr6:11723800-11731000 Weak transcription Duodenum Mucosa Duodenum
13 chr6:11725200-11748600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr6:11725400-11731000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr6:11726200-11731000 Weak transcription Fetal Intestine Large intestine
16 chr6:11726400-11744600 Weak transcription Right Atrium heart
17 chr6:11727000-11730200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr6:11727000-11734000 Enhancers Primary hematopoietic stem cells blood
19 chr6:11727600-11731000 Weak transcription HSMMtube muscle
20 chr6:11727600-11731800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr6:11727800-11732800 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr6:11728000-11730200 Enhancers Fetal Thymus thymus
23 chr6:11728200-11731000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr6:11728400-11731200 Enhancers GM12878-XiMat blood
25 chr6:11728600-11731200 Weak transcription Spleen Spleen
26 chr6:11728800-11730200 Enhancers Primary T cells fromperipheralblood blood
27 chr6:11728800-11732400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr6:11729000-11733000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr6:11729200-11732600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr6:11729200-11732600 Enhancers Primary T helper 17 cells PMA-I stimulated --
31 chr6:11729400-11732200 Weak transcription Primary B cells from peripheral blood blood
32 chr6:11729400-11733200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
33 chr6:11729400-11733200 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr6:11729600-11730400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
35 chr6:11729600-11731200 Enhancers Primary T cells from cord blood blood
36 chr6:11729600-11733200 Enhancers Primary T helper cells fromperipheralblood blood
37 chr6:11729600-11734000 Enhancers Primary monocytes fromperipheralblood blood
38 chr6:11729800-11730800 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr6:11729800-11731600 Enhancers Primary T regulatory cells fromperipheralblood blood
40 chr6:11729800-11731800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr6:11729800-11733200 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr6:11730000-11730400 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr6:11730000-11732400 Enhancers Primary T killer memory cells from peripheral blood blood
44 chr6:11730000-11732600 Enhancers Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015