Variant report

Variant	rs210897
Chromosome Location	chr6:11729299-11729300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:11729203-11729723	K562	blood:	n/a	n/a
2	CCNT2	chr6:11729222-11729419	K562	blood:	n/a	chr6:11729362-11729382
3	TAL1	chr6:11729199-11729492	K562	blood:	n/a	chr6:11729362-11729380 chr6:11729201-11729210
4	CEBPD	chr6:11729098-11729493	K562	blood:	n/a	n/a
5	TEAD4	chr6:11729255-11729533	K562	blood:	n/a	n/a
6	TEAD4	chr6:11729206-11729619	K562	blood:	n/a	n/a
7	EP300	chr6:11729252-11729529	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11728883..11730943-chr6:11731032..11732727,2	K562	blood:

Variant related genes	Relation type
ADTRP	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs105924	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665068	0.98[ASN][1000 genomes]
rs191921	0.83[EUR][1000 genomes]
rs210896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2235404	0.90[ASN][1000 genomes]
rs2235417	0.98[ASN][1000 genomes]
rs2235421	0.99[ASN][1000 genomes]
rs2294429	1.00[ASN][1000 genomes]
rs3765253	0.98[ASN][1000 genomes]
rs4711401	0.99[ASN][1000 genomes]
rs7747449	0.91[ASN][1000 genomes]
rs9296142	0.98[ASN][1000 genomes]
rs9469927	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv462637	chr6:11710554-11733777	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600990	chr6:11710554-11733777	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs210897	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11710800-11731000	Weak transcription	Gastric	stomach
2	chr6:11711200-11731000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:11711600-11731800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:11714600-11731600	Weak transcription	Small Intestine	intestine
5	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
6	chr6:11719600-11732400	Weak transcription	NHEK	skin
7	chr6:11723200-11731600	Strong transcription	HSMM	muscle
8	chr6:11723200-11732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:11723200-11738400	Weak transcription	HMEC	breast
10	chr6:11723600-11744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:11723800-11730600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:11723800-11731000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:11725400-11731000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:11726200-11731000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:11726400-11744600	Weak transcription	Right Atrium	heart
17	chr6:11727000-11730200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:11727000-11734000	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:11727600-11731000	Weak transcription	HSMMtube	muscle
20	chr6:11727600-11731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:11727800-11732800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:11728000-11730000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:11728000-11730200	Enhancers	Fetal Thymus	thymus
24	chr6:11728200-11731000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:11728400-11729400	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:11728400-11729600	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr6:11728400-11729600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr6:11728400-11729600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:11728400-11729800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr6:11728400-11730000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr6:11728400-11730000	Enhancers	K562	blood
32	chr6:11728400-11731200	Enhancers	GM12878-XiMat	blood
33	chr6:11728600-11729400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:11728600-11729800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr6:11728600-11731200	Weak transcription	Spleen	Spleen
36	chr6:11728800-11729800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:11728800-11730000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:11728800-11730200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:11728800-11732400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:11729000-11729600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr6:11729000-11733000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:11729200-11729400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:11729200-11729600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:11729200-11729600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:11729200-11732600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:11729200-11732600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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