The 2.0 version of rSNPBase

Variant report

Variant rs1061016
Chromosome Location chr1:180853815-180853816
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180805800-180881000 Weak transcription Aorta Aorta
2 chr1:180812200-180867000 Weak transcription Ovary ovary
3 chr1:180822000-180862800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:180822800-180862800 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr1:180823000-180854600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:180823600-180860000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:180823800-180862600 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:180824000-180867600 Weak transcription Fetal Muscle Leg muscle
9 chr1:180824000-180880800 Weak transcription Right Ventricle heart
10 chr1:180827800-180856600 Weak transcription Primary hematopoietic stem cells blood
11 chr1:180828600-180867800 Weak transcription HSMM muscle
12 chr1:180830000-180867600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:180831200-180858600 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr1:180832600-180854400 Weak transcription Liver Liver
15 chr1:180832800-180861800 Weak transcription HepG2 liver
16 chr1:180834800-180855800 Weak transcription Gastric stomach
17 chr1:180835400-180862800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:180835600-180855400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:180835800-180856600 Weak transcription Fetal Intestine Large intestine
20 chr1:180835800-180858800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:180835800-180861600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:180835800-180870400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:180841000-180867800 Weak transcription Lung lung
24 chr1:180841800-180855000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr1:180841800-180856000 Weak transcription Fetal Muscle Trunk muscle
26 chr1:180842200-180857200 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr1:180842200-180857600 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:180842200-180858600 Weak transcription H1 Cell Line embryonic stem cell
29 chr1:180842400-180858000 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr1:180843600-180855800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr1:180843600-180856800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:180843600-180862800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr1:180843800-180858000 Weak transcription Primary B cells from peripheral blood blood
34 chr1:180843800-180858600 Weak transcription HMEC breast
35 chr1:180844200-180872200 Weak transcription Esophagus oesophagus
36 chr1:180844400-180856000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:180844400-180858000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:180844400-180867400 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr1:180845800-180856400 Weak transcription Psoas Muscle Psoas
40 chr1:180845800-180869000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:180847400-180875400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr1:180848800-180857400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:180849000-180854000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr1:180849400-180856600 Weak transcription Primary T cells from cord blood blood
45 chr1:180849400-180867200 Weak transcription H9 Cell Line embryonic stem cell
46 chr1:180849600-180856600 Weak transcription Duodenum Mucosa Duodenum
47 chr1:180849800-180856000 Weak transcription Stomach Smooth Muscle stomach
48 chr1:180850400-180854400 Strong transcription Left Ventricle heart
49 chr1:180850800-180854600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:180851000-180855800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015