Variant report

Variant	rs4652526
Chromosome Location	chr1:180703462-180703463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180701670..180704293-chr1:180704496..180706159,2	MCF-7	breast:
2	chr1:180659309..180661145-chr1:180702429..180704550,2	MCF-7	breast:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1043069	0.96[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs10494532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1061015	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1061016	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10737351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10753224	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10753225	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10798788	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10798790	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10798792	0.87[ASN][1000 genomes]
rs10798793	0.85[ASN][1000 genomes]
rs10798794	0.87[ASN][1000 genomes]
rs10798795	0.90[EUR][1000 genomes]
rs10914074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914076	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914077	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914078	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914079	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10914083	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10914084	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10914095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10914107	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10914108	0.87[EUR][1000 genomes]
rs10914111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10914112	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10914113	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10914115	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10914117	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10914123	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10914124	0.96[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs11585146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11585295	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11585424	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12064405	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12064862	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12064913	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12119247	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120522	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120797	0.85[ASN][1000 genomes]
rs12121436	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12131056	0.94[ASN][1000 genomes]
rs12132252	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12135869	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12137133	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12137673	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12141176	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12142163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12143462	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12143674	0.91[EUR][1000 genomes]
rs12143915	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12564487	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12725006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12733315	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1339769	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1533422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1554183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1554184	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1554185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17373584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973674	0.85[ASN][1000 genomes]
rs1980157	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2027354	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2138399	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2176183	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2176184	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271669	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2331887	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2877438	0.96[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs2944261	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs3002118	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3002119	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs34111145	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3761903	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs3761904	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3789367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3789368	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3789369	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3789370	0.82[ASN][1000 genomes]
rs3789373	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3842895	0.93[CHB][hapmap]
rs3845407	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3856059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3856060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3903979	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3908048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4454505	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4550006	0.82[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4598454	0.81[ASN][1000 genomes]
rs4652525	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4652527	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4652528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4652529	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4652530	0.82[ASN][1000 genomes]
rs4652531	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4652533	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652535	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61809343	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61811244	0.92[EUR][1000 genomes]
rs6425655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6661325	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs6661417	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6676219	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6677349	0.87[ASN][1000 genomes]
rs6677506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6677570	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6677681	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6688486	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6689104	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6699726	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6703189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7349119	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7516646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7536258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7544774	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7546227	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7546516	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7548261	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7548671	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7555356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7556592	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9701903	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9919167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180698000-180704200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:180701000-180706200	Weak transcription	Pancreas	Pancrea
3	chr1:180701400-180706400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr1:180701600-180704400	ZNF genes & repeats	K562	blood
5	chr1:180701800-180704400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr1:180702400-180703600	Weak transcription	Left Ventricle	heart
7	chr1:180702600-180704400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:180703200-180703600	ZNF genes & repeats	Psoas Muscle	Psoas
9	chr1:180703200-180704200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr1:180703400-180704000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:180703400-180704000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr1:180703400-180704200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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