Variant report

Variant	rs6661325
Chromosome Location	chr1:180597577-180597578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr1:180597461-180598337	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:180592755..180597766-chr1:180599324..180602302,7	MCF-7	breast:
2	chr1:180588663..180591618-chr1:180597337..180599077,2	K562	blood:
3	chr1:180588580..180592293-chr1:180593083..180599077,8	K562	blood:

Variant related genes	Relation type
XPR1	TF binding region
ENSG00000143324	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494532	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs10914057	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10914074	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs10914076	0.81[CHB][hapmap]
rs10914077	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10914080	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs10914083	0.81[CHB][hapmap]
rs10914084	0.83[CEU][hapmap]
rs10914095	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10914107	0.81[CHB][hapmap]
rs10914111	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs11585146	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs12120511	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs12121436	0.81[CHB][hapmap];0.81[MEX][hapmap]
rs12142163	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs12725006	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs1554183	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs1554185	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs17373584	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs2877438	0.81[MEX][hapmap]
rs2944261	0.81[CHB][hapmap]
rs3002118	0.81[CHB][hapmap]
rs3002119	0.81[CHB][hapmap]
rs3761904	0.81[CEU][hapmap];0.80[CHB][hapmap];0.81[MEX][hapmap]
rs3789373	0.81[CHB][hapmap]
rs3856059	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs4652523	0.81[AMR][1000 genomes]
rs4652525	0.81[CHB][hapmap]
rs4652526	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs4652527	0.81[CHB][hapmap]
rs4652528	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs4652529	0.81[CHB][hapmap]
rs6676219	0.81[CHB][hapmap]
rs6677681	0.81[CHB][hapmap]
rs7544774	0.81[CEU][hapmap]
rs7546227	0.81[CHB][hapmap]
rs7546516	0.81[CHB][hapmap]
rs7548671	0.85[CHB][hapmap]
rs7555356	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7556592	0.81[CHB][hapmap]
rs9919167	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180581800-180600600	Weak transcription	Fetal Heart	heart
2	chr1:180593200-180601000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:180593400-180599400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:180593400-180600200	Weak transcription	K562	blood
5	chr1:180593600-180599600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:180597400-180598000	Enhancers	Spleen	Spleen
7	chr1:180597400-180599200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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