Variant report

Variant rs6676219
Chromosome Location chr1:180602881-180602882
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180600800-180603000 Active TSS GM12878-XiMat blood
2 chr1:180600800-180603400 Active TSS Brain Anterior Caudate brain
3 chr1:180600800-180603600 Active TSS Thymus Thymus
4 chr1:180600800-180603800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:180600800-180604400 Active TSS Fetal Brain Male brain
6 chr1:180601000-180603000 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
7 chr1:180601000-180603000 Active TSS Brain Cingulate Gyrus brain
8 chr1:180601000-180603000 Active TSS Brain Hippocampus Middle brain
9 chr1:180601000-180603000 Active TSS Psoas Muscle Psoas
10 chr1:180601000-180603200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr1:180601000-180603200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:180601000-180603200 Active TSS Fetal Kidney kidney
13 chr1:180601000-180603200 Active TSS Stomach Smooth Muscle stomach
14 chr1:180601000-180604200 Active TSS Pancreatic Islets Pancreatic Islet
15 chr1:180601000-180606000 Active TSS Right Ventricle heart
16 chr1:180601200-180603600 Active TSS Aorta Aorta
17 chr1:180601200-180603600 Active TSS Skeletal Muscle Male skeletal muscle
18 chr1:180601200-180603600 Active TSS HMEC breast
19 chr1:180601200-180605800 Active TSS Breast Myoepithelial Primary Cells Breast
20 chr1:180601800-180603000 Active TSS Right Atrium heart
21 chr1:180601800-180603200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:180601800-180603200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:180601800-180603800 Active TSS Brain Germinal Matrix brain
24 chr1:180601800-180603800 Flanking Active TSS Dnd41 blood
25 chr1:180602000-180603000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:180602000-180603000 Weak transcription Ovary ovary
27 chr1:180602000-180603000 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:180602000-180603400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:180602000-180603400 Flanking Active TSS Duodenum Smooth Muscle Duodenum
30 chr1:180602000-180615800 Weak transcription Lung lung
31 chr1:180602000-180618800 Weak transcription Pancreas Pancrea
32 chr1:180602000-180645200 Weak transcription Gastric stomach
33 chr1:180602200-180603000 Weak transcription H9 Cell Line embryonic stem cell
34 chr1:180602200-180603000 Enhancers Brain Substantia Nigra brain
35 chr1:180602200-180603200 Flanking Active TSS HUES48 Cell Line embryonic stem cell
36 chr1:180602200-180603200 Enhancers Primary neutrophils fromperipheralblood blood
37 chr1:180602200-180603200 Enhancers Primary B cells from peripheral blood blood
38 chr1:180602200-180603200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:180602200-180603200 Enhancers Liver Liver
40 chr1:180602200-180603400 Flanking Active TSS HUES64 Cell Line embryonic stem cell
41 chr1:180602200-180603400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:180602200-180603400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr1:180602200-180603400 Enhancers Primary monocytes fromperipheralblood blood
44 chr1:180602200-180603400 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr1:180602200-180603400 Enhancers Primary T killer naive cells fromperipheralblood blood
46 chr1:180602200-180603400 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:180602200-180603600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:180602200-180603600 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr1:180602200-180603600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:180602200-180605000 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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