Variant report
Variant | rs3842895 |
---|---|
Chromosome Location | chr1:180596196-180596197 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MAFF | chr1:180595877-180596196 | HepG2 | liver: | n/a | chr1:180596038-180596056 chr1:180596011-180596029 |
2 | MAFK | chr1:180595881-180596215 | HepG2 | liver: | n/a | chr1:180596041-180596052 chr1:180596017-180596028 chr1:180596040-180596055 chr1:180596041-180596052 chr1:180596040-180596051 chr1:180596040-180596051 chr1:180596017-180596028 chr1:180596016-180596027 chr1:180596039-180596053 |
No data |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:180593598..180597403-chr1:180599075..180602374,3 | K562 | blood: | |
2 | chr1:180582342..180585190-chr1:180594710..180596635,2 | K562 | blood: | |
3 | chr1:180592755..180597766-chr1:180599324..180602302,7 | MCF-7 | breast: | |
4 | chr1:180588580..180592293-chr1:180593083..180599077,8 | K562 | blood: | |
5 | chr1:180590595..180597087-chr1:180599417..180603981,6 | K562 | blood: | |
6 | chr1:180501690..180504014-chr1:180594287..180597051,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
XPR1 | TF binding region |
ENSG00000143324 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10494532 | 0.93[CHB][hapmap] |
rs10798788 | 0.92[CHB][hapmap] |
rs10914074 | 0.93[CHB][hapmap] |
rs10914076 | 0.93[CHB][hapmap] |
rs10914077 | 0.93[CHB][hapmap] |
rs10914080 | 0.93[CHB][hapmap] |
rs10914083 | 0.93[CHB][hapmap] |
rs10914084 | 0.83[CEU][hapmap];0.92[CHB][hapmap] |
rs10914095 | 0.93[CHB][hapmap] |
rs10914107 | 0.93[CHB][hapmap] |
rs10914111 | 0.93[CHB][hapmap] |
rs10914112 | 0.92[CHB][hapmap] |
rs11585146 | 0.93[CHB][hapmap] |
rs12064913 | 0.86[CHB][hapmap] |
rs12120511 | 0.93[CHB][hapmap] |
rs12121436 | 0.93[CHB][hapmap] |
rs12142163 | 0.93[CHB][hapmap] |
rs12143915 | 0.92[CHB][hapmap] |
rs12725006 | 0.93[CHB][hapmap] |
rs1554183 | 0.93[CHB][hapmap] |
rs1554185 | 0.93[CHB][hapmap] |
rs17373584 | 0.93[CHB][hapmap] |
rs1980157 | 0.86[CHB][hapmap] |
rs2877438 | 0.84[CHB][hapmap] |
rs2944261 | 0.93[CHB][hapmap] |
rs3002118 | 0.93[CHB][hapmap] |
rs3002119 | 0.93[CHB][hapmap] |
rs3789373 | 0.93[CHB][hapmap] |
rs3856059 | 0.93[CHB][hapmap] |
rs4652523 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4652525 | 0.93[CHB][hapmap] |
rs4652526 | 0.93[CHB][hapmap] |
rs4652527 | 0.93[CHB][hapmap] |
rs4652528 | 0.83[CEU][hapmap];0.93[CHB][hapmap] |
rs4652529 | 0.93[CHB][hapmap] |
rs6661105 | 0.92[MEX][hapmap];0.91[MKK][hapmap] |
rs6661417 | 0.86[CHB][hapmap] |
rs6676219 | 0.93[CHB][hapmap] |
rs6677681 | 0.93[CHB][hapmap] |
rs7546227 | 0.93[CHB][hapmap] |
rs7546516 | 0.93[CHB][hapmap] |
rs7548671 | 0.92[CHB][hapmap] |
rs7555356 | 0.93[CHB][hapmap] |
rs7556592 | 0.93[CHB][hapmap] |
rs9919167 | 0.93[CHB][hapmap] |
rs9970145 | 0.92[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003359 | chr1:180300936-180727561 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 48 gene(s) | inside rSNPs | diseases |
2 | nsv949311 | chr1:180438895-180692815 | ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
3 | nsv872578 | chr1:180510771-180842344 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:180581800-180600600 | Weak transcription | Fetal Heart | heart |
2 | chr1:180591400-180596600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr1:180593200-180601000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
4 | chr1:180593400-180599400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
5 | chr1:180593400-180600200 | Weak transcription | K562 | blood |
6 | chr1:180593600-180599600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |