Variant report

Variant	rs1064827
Chromosome Location	chr6:36722147-36722148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36716404..36719581-chr6:36720288..36722523,3	MCF-7	breast:
2	chr6:36591678..36593501-chr6:36719178..36722554,3	MCF-7	breast:
3	chr6:36584982..36587013-chr6:36719962..36722309,3	MCF-7	breast:
4	chr6:36560654..36563431-chr6:36720609..36722579,2	MCF-7	breast:
5	chr6:36645102..36656546-chr6:36717974..36730993,29	MCF-7	breast:
6	chr6:36574880..36577786-chr6:36720826..36723151,2	K562	blood:
7	chr6:36644838..36653438-chr6:36718524..36730954,23	MCF-7	breast:
8	chr6:36572562..36574759-chr6:36721579..36723537,2	K562	blood:
9	chr6:36714240..36716919-chr6:36719945..36722727,5	MCF-7	breast:
10	chr6:36575546..36577786-chr6:36721228..36723151,2	K562	blood:
11	chr6:36560659..36563311-chr6:36721954..36723559,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1010790	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1010791	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1864750	0.95[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2052990	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236436	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs236444	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs236452	0.87[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs370687	0.84[CHB][hapmap]
rs763047	0.84[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs763048	0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs7772191	0.86[CEU][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380596	0.87[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394380	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462215	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv885814	chr6:36704807-36722842	Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1064827	MAPK14	cis	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36709200-36727000	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:36718200-36722200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:36718400-36723400	Enhancers	Duodenum Mucosa	Duodenum
4	chr6:36718400-36723400	Enhancers	NHEK	skin
5	chr6:36718600-36722600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:36718600-36723200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:36718600-36724200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:36718600-36725400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:36718600-36725800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:36718600-36726600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:36718800-36723400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:36718800-36726800	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:36718800-36727400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:36718800-36727400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr6:36719400-36724000	Enhancers	Colonic Mucosa	Colon
16	chr6:36719600-36723000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:36719600-36724000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:36719600-36724800	Enhancers	Esophagus	oesophagus
19	chr6:36719600-36725800	Enhancers	HUVEC	blood vessel
20	chr6:36719600-36727000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:36719800-36723000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:36719800-36723000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:36719800-36723000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:36719800-36724800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:36719800-36725600	Enhancers	Spleen	Spleen
26	chr6:36719800-36726000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:36720000-36722400	Enhancers	Placenta	Placenta
28	chr6:36720000-36723200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:36720000-36724000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:36720000-36726200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:36720200-36726400	Weak transcription	Pancreas	Pancrea
32	chr6:36720600-36722400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:36720600-36723400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:36720600-36723800	Weak transcription	Lung	lung
35	chr6:36720600-36725600	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:36720600-36726400	Weak transcription	HMEC	breast
37	chr6:36721000-36722800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:36721000-36723400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:36721000-36724400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr6:36721200-36722600	Weak transcription	Fetal Stomach	stomach
41	chr6:36721200-36723400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:36721200-36723600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:36721200-36725400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:36721200-36726600	Weak transcription	Brain Anterior Caudate	brain
45	chr6:36721200-36726600	Weak transcription	Fetal Heart	heart
46	chr6:36721200-36726600	Weak transcription	HSMMtube	muscle
47	chr6:36721400-36723400	Weak transcription	Adipose Nuclei	Adipose
48	chr6:36721400-36723400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:36721400-36723400	Weak transcription	Right Atrium	heart
50	chr6:36721400-36726400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links