Variant report

Variant	rs370687
Chromosome Location	chr6:36728961-36728962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1064827	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs171033	0.84[ASN][1000 genomes]
rs2052990	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs236436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236444	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4711464	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6927504	0.89[ASN][1000 genomes]
rs763047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs763048	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9380596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36721800-36733200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
3	chr6:36723800-36736200	Weak transcription	Right Atrium	heart
4	chr6:36724000-36736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:36724800-36734400	Weak transcription	Right Ventricle	heart
6	chr6:36725600-36730000	Weak transcription	Spleen	Spleen
7	chr6:36725600-36733800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:36725800-36735400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:36726000-36736200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:36726600-36729600	Enhancers	Brain Anterior Caudate	brain
11	chr6:36726600-36729800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:36726800-36729600	Enhancers	Brain Angular Gyrus	brain
13	chr6:36726800-36729600	Enhancers	Brain Hippocampus Middle	brain
14	chr6:36726800-36729600	Enhancers	Brain Substantia Nigra	brain
15	chr6:36726800-36730400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:36726800-36733800	Weak transcription	Pancreas	Pancrea
17	chr6:36727000-36730400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:36727000-36732000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:36727000-36732000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:36727000-36732000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:36727000-36732400	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:36727000-36733400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:36727000-36733800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:36727200-36734000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:36727200-36736400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:36727400-36735200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:36727400-36736200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:36727600-36732400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:36727600-36732800	Weak transcription	GM12878-XiMat	blood
30	chr6:36727600-36733000	Weak transcription	Colonic Mucosa	Colon
31	chr6:36728000-36729000	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:36728000-36729600	Enhancers	Brain Cingulate Gyrus	brain
33	chr6:36728200-36729000	Enhancers	Primary B cells from cord blood	blood
34	chr6:36728200-36729600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:36728200-36730800	Strong transcription	Fetal Stomach	stomach
36	chr6:36728400-36729200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:36728600-36729400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:36728600-36729600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:36728600-36729600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:36728600-36732600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36728600-36732800	Weak transcription	HSMMtube	muscle

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