Variant report

Variant	rs4711464
Chromosome Location	chr6:36740367-36740368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36739374..36742354-chr6:36743945..36746524,2	K562	blood:
2	chr6:36735765..36740410-chr6:36741274..36745029,7	K562	blood:
3	chr6:36738035..36740977-chr6:36841095..36842978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2052990	0.89[ASN][1000 genomes]
rs236436	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs236444	0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs370687	1.00[JPT][hapmap]
rs6927504	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763047	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs763048	0.85[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs916297	0.87[ASW][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs9380596	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36734400-36744800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36735800-36740400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:36736400-36740800	Enhancers	Fetal Thymus	thymus
5	chr6:36737400-36741200	Weak transcription	Fetal Brain Male	brain
6	chr6:36737600-36742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:36737800-36741400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:36737800-36742200	Weak transcription	Fetal Brain Female	brain
9	chr6:36737800-36744400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:36737800-36744800	Weak transcription	Brain Germinal Matrix	brain
11	chr6:36738000-36745000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:36738000-36745200	Weak transcription	Fetal Lung	lung
13	chr6:36738000-36746000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
15	chr6:36738400-36740600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
17	chr6:36738600-36741000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:36738600-36742000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:36738600-36742800	Weak transcription	Left Ventricle	heart
20	chr6:36738600-36743200	Strong transcription	Fetal Stomach	stomach
21	chr6:36738600-36746000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
23	chr6:36739000-36740400	Flanking Active TSS	Dnd41	blood
24	chr6:36739000-36740600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:36739200-36742200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:36739400-36740600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:36739600-36740400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:36739600-36740400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:36739600-36740400	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:36739600-36740600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:36739600-36740600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:36739600-36740600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:36739800-36740400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:36739800-36740400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:36739800-36740400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:36739800-36740400	Enhancers	Brain Anterior Caudate	brain
37	chr6:36739800-36740400	Enhancers	Brain Substantia Nigra	brain
38	chr6:36739800-36740400	Enhancers	Thymus	Thymus
39	chr6:36739800-36740600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:36740000-36740400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:36740000-36740400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr6:36740000-36740400	Enhancers	Brain Hippocampus Middle	brain
43	chr6:36740000-36740400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:36740000-36740600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:36740000-36740600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:36740000-36740600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:36740200-36740400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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