Variant report

Variant	rs1071873
Chromosome Location	chr1:70196632-70196633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10889850	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11209528	0.87[CEU][hapmap];0.82[ASN][1000 genomes]
rs11209529	0.86[CEU][hapmap];0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs11209530	0.82[ASN][1000 genomes]
rs11209532	0.89[EUR][1000 genomes]
rs12036373	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12042844	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565200	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1340766	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1340767	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1340769	0.85[YRI][hapmap]
rs1361493	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs1417441	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2007721	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4650307	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs6667737	0.82[ASN][1000 genomes]
rs6686211	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6700510	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7524277	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs765795	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969051	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70195800-70203800	Weak transcription	Fetal Brain Female	brain

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