Variant report

Variant	rs969051
Chromosome Location	chr1:70202937-70202938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1071873	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10889850	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs11209528	0.95[CEU][hapmap]
rs11209529	0.95[CEU][hapmap];0.83[CHB][hapmap]
rs11209532	0.85[EUR][1000 genomes]
rs12036373	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042844	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12565200	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs1340766	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs1340767	0.85[EUR][1000 genomes]
rs1340769	0.82[MKK][hapmap]
rs1417441	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2007721	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6686211	0.84[EUR][1000 genomes]
rs6700510	0.84[EUR][1000 genomes]
rs7524277	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs765795	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70195800-70203800	Weak transcription	Fetal Brain Female	brain
2	chr1:70199600-70204200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:70201800-70203400	Weak transcription	Fetal Lung	lung
4	chr1:70202800-70203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:70202800-70203800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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