Variant report

Variant	rs1072709
Chromosome Location	chr20:22693033-22693034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10485634	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10485635	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10485636	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1072710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13036763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13037107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13037452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13037517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13037649	0.81[EUR][1000 genomes]
rs13037670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13037831	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13037887	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13038194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13039038	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13039191	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13040066	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13040962	0.83[CEU][hapmap]
rs13042154	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13042246	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13043823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13044630	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13045430	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1983920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983921	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404489	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048280	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048283	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6048284	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6106548	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62203753	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71212785	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7260708	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7260791	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7263541	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7263645	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7264150	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7265587	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7265809	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7265907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7266066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270014	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270374	0.83[CEU][hapmap]
rs7270493	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7270606	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7272556	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs745661	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8114980	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8117574	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8117625	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8117637	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8117659	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8117748	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8119621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8125753	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8126106	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs965762	0.80[EUR][1000 genomes]
rs996070	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs996071	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22687200-22697400	Weak transcription	Aorta	Aorta
2	chr20:22692400-22693200	Enhancers	Hela-S3	cervix
3	chr20:22692800-22693400	Enhancers	A549	lung
4	chr20:22692800-22697200	Weak transcription	Stomach Mucosa	stomach
5	chr20:22693000-22693400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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