Variant report

Variant	rs8114980
Chromosome Location	chr20:22693360-22693361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10485634	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10485635	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10485636	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1072709	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1072710	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12480993	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12481000	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12481542	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13036763	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13037107	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13037452	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13037517	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13037670	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13037831	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13037887	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13038194	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13039038	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13039191	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13040066	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13040962	0.83[CEU][hapmap]
rs13042154	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13042246	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13043823	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13044630	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13045430	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1983920	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983921	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983922	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983923	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983924	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2404489	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048280	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6048283	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048284	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6106548	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62203753	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71212785	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7260708	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7260791	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7263541	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7263645	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7264150	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7265587	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7265809	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7265907	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7266066	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7270014	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7270374	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs7270493	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7270606	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7272556	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs745661	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8117574	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8117625	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8117637	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8117659	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8117748	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8119621	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8125753	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8126106	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs996070	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs996071	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22687200-22697400	Weak transcription	Aorta	Aorta
2	chr20:22692800-22693400	Enhancers	A549	lung
3	chr20:22692800-22697200	Weak transcription	Stomach Mucosa	stomach
4	chr20:22693000-22693400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:22693200-22697000	Weak transcription	Hela-S3	cervix

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