Variant report

Variant	rs1072748
Chromosome Location	chr4:22559964-22559965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10005993	0.98[EUR][1000 genomes]
rs10006074	0.98[EUR][1000 genomes]
rs10024394	1.00[EUR][1000 genomes]
rs10027719	0.94[EUR][1000 genomes]
rs10031013	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10938906	0.90[EUR][1000 genomes]
rs11722596	1.00[EUR][1000 genomes]
rs11731010	1.00[EUR][1000 genomes]
rs2061695	0.98[EUR][1000 genomes]
rs2061696	0.98[EUR][1000 genomes]
rs3911795	1.00[EUR][1000 genomes]
rs4308352	0.98[EUR][1000 genomes]
rs4697020	0.94[EUR][1000 genomes]
rs4697022	1.00[EUR][1000 genomes]
rs4697317	0.85[EUR][1000 genomes]
rs4697318	0.94[EUR][1000 genomes]
rs6448164	1.00[EUR][1000 genomes]
rs6448169	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815350	0.98[EUR][1000 genomes]
rs6816538	0.94[EUR][1000 genomes]
rs6830242	0.94[EUR][1000 genomes]
rs6838206	0.98[EUR][1000 genomes]
rs6839926	0.96[EUR][1000 genomes]
rs7660731	1.00[EUR][1000 genomes]
rs7664725	1.00[EUR][1000 genomes]
rs7674533	0.90[EUR][1000 genomes]
rs7674569	0.98[EUR][1000 genomes]
rs7674602	0.98[EUR][1000 genomes]
rs7687254	0.86[EUR][1000 genomes]
rs7690673	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22559000-22560000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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