Variant report

Variant	rs7687254
Chromosome Location	chr4:22524253-22524254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22523864..22526257-chr4:22533870..22535996,2	K562	blood:
2	chr4:22516426..22520250-chr4:22520676..22526735,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152990	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10005993	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10006074	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10024394	0.86[EUR][1000 genomes]
rs10027719	0.81[EUR][1000 genomes]
rs10031013	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1072748	0.86[EUR][1000 genomes]
rs10938906	0.81[ASN][1000 genomes]
rs1120044	1.00[CEU][hapmap]
rs11722596	0.86[EUR][1000 genomes]
rs11731010	0.86[EUR][1000 genomes]
rs1960509	0.82[YRI][hapmap]
rs2016836	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2061695	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2061696	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3911795	0.86[EUR][1000 genomes]
rs4308352	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4697020	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4697022	0.86[EUR][1000 genomes]
rs4697317	0.85[AFR][1000 genomes]
rs4697318	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6448164	0.86[EUR][1000 genomes]
rs6448167	0.85[AFR][1000 genomes]
rs6448169	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6815350	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6816538	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6830242	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6838206	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6839926	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7660731	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes]
rs7660798	0.85[AFR][1000 genomes]
rs7664725	0.86[EUR][1000 genomes]
rs7674533	0.81[EUR][1000 genomes]
rs7674569	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7674602	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7690673	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22518800-22532600	Weak transcription	Fetal Lung	lung
2	chr4:22523600-22524400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:22523600-22524600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:22523600-22525200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:22523600-22525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:22523600-22525400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr4:22523600-22525400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:22523800-22525400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:22523800-22525400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:22524200-22525400	Enhancers	HUES64 Cell Line	embryonic stem cell

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