Variant report

Variant	rs6448167
Chromosome Location	chr4:22556528-22556529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10005993	0.81[AFR][1000 genomes]
rs10006074	0.81[AFR][1000 genomes]
rs17535183	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960509	0.82[YRI][hapmap]
rs2061695	0.81[AFR][1000 genomes]
rs2061696	0.81[AFR][1000 genomes]
rs4308352	0.81[AFR][1000 genomes]
rs4697318	0.81[AFR][1000 genomes]
rs6815350	0.81[AFR][1000 genomes]
rs6830242	0.81[AFR][1000 genomes]
rs6838206	0.81[AFR][1000 genomes]
rs7660731	0.81[GIH][hapmap];0.82[YRI][hapmap]
rs7660798	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7674569	0.81[AFR][1000 genomes]
rs7674602	0.81[AFR][1000 genomes]
rs7687254	0.85[ASW][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22555800-22557600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:22555800-22557600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:22556400-22556600	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links