Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016786	0.90[EUR][1000 genomes]
rs1016787	0.90[EUR][1000 genomes]
rs1026929	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12628995	0.99[ASN][1000 genomes]
rs1351782	0.91[EUR][1000 genomes]
rs1483844	0.80[AMR][1000 genomes]
rs1809485	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905467	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2195919	0.91[ASN][1000 genomes]
rs6769856	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6784498	0.89[AMR][1000 genomes]
rs752152	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7636904	0.83[ASN][1000 genomes]
rs7648222	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs873838	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs900656	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs900657	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs900658	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs922942	0.91[EUR][1000 genomes]
rs922943	0.91[EUR][1000 genomes]
rs9310778	0.90[EUR][1000 genomes]
rs9310780	0.91[EUR][1000 genomes]
rs9823425	0.97[ASN][1000 genomes]
rs9880591	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25416200-25416800	Enhancers	Fetal Intestine Small	intestine

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