Variant report

Variant	rs9823425
Chromosome Location	chr3:25418758-25418759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1072823	0.97[ASN][1000 genomes]
rs12628995	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1483844	0.81[AMR][1000 genomes]
rs1809485	0.87[ASN][1000 genomes]
rs1905467	0.88[ASN][1000 genomes]
rs2195919	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56059341	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6550967	0.80[JPT][hapmap]
rs6769856	0.87[ASN][1000 genomes]
rs6784498	0.80[ASN][1000 genomes]
rs752152	0.87[ASN][1000 genomes]
rs7636904	0.86[ASN][1000 genomes]
rs7648222	0.86[ASN][1000 genomes]
rs873838	0.86[ASN][1000 genomes]
rs900656	0.85[ASN][1000 genomes]
rs900657	0.87[ASN][1000 genomes]
rs900658	0.87[ASN][1000 genomes]
rs9839284	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9876345	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25417600-25421200	Enhancers	Fetal Intestine Small	intestine
3	chr3:25418400-25427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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