Variant report

Variant	rs9876345
Chromosome Location	chr3:25423265-25423266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12628995	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1483844	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2195919	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56059341	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6550972	0.80[ASN][1000 genomes]
rs6768560	0.82[ASN][1000 genomes]
rs6784498	0.98[ASN][1000 genomes]
rs716160	0.80[ASN][1000 genomes]
rs7619119	0.81[ASN][1000 genomes]
rs9823425	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9839284	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25418400-25427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:25422000-25423400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:25422000-25427000	Weak transcription	Placenta	Placenta
4	chr3:25422400-25423600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:25423000-25423600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:25423000-25426800	Weak transcription	Fetal Intestine Large	intestine
7	chr3:25423000-25427400	Weak transcription	Fetal Kidney	kidney
8	chr3:25423200-25423400	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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