Variant report

Variant	rs10732273
Chromosome Location	chr1:180885430-180885431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180880902..180883587-chr1:180884208..180886874,3	MCF-7	breast:
2	chr1:180882477..180885786-chr1:180922759..180925050,3	MCF-7	breast:
3	chr1:180884197..180885718-chr4:69153705..69156603,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232586	Chromatin interaction
ENSG00000135835	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10914081	1.00[CHB][hapmap]
rs1400038	1.00[AFR][1000 genomes]
rs1515960	1.00[AFR][1000 genomes]
rs2063849	1.00[AFR][1000 genomes]
rs2331995	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2944260	1.00[AFR][1000 genomes]
rs2944263	1.00[AFR][1000 genomes]
rs3002120	1.00[AFR][1000 genomes]
rs3002122	0.87[AFR][1000 genomes]
rs3013635	1.00[AFR][1000 genomes]
rs3013636	1.00[AFR][1000 genomes]
rs3845408	1.00[AFR][1000 genomes]
rs3856061	1.00[AFR][1000 genomes]
rs4651076	1.00[AFR][1000 genomes]
rs4652534	1.00[AFR][1000 genomes]
rs6683252	1.00[AFR][1000 genomes]
rs7531753	1.00[AFR][1000 genomes]
rs7535885	1.00[AFR][1000 genomes]
rs7548808	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv872579	chr1:180881148-180931508	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180882400-180894600	Weak transcription	Pancreas	Pancrea
2	chr1:180882600-180894000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:180882800-180885800	Weak transcription	Lung	lung
4	chr1:180882800-180886000	Weak transcription	Brain Anterior Caudate	brain
5	chr1:180882800-180886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:180882800-180887000	Weak transcription	Spleen	Spleen
7	chr1:180882800-180887200	Weak transcription	Placenta	Placenta
8	chr1:180882800-180887400	Weak transcription	Gastric	stomach
9	chr1:180882800-180888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:180882800-180889400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:180882800-180891200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:180882800-180892600	Weak transcription	Esophagus	oesophagus
13	chr1:180882800-180894400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:180883000-180885600	Weak transcription	Aorta	Aorta
15	chr1:180883000-180885600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:180883000-180885800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:180883000-180886800	Weak transcription	HSMMtube	muscle
18	chr1:180883000-180891200	Weak transcription	Fetal Brain Female	brain
19	chr1:180883000-180891600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:180883000-180892200	Weak transcription	Brain Germinal Matrix	brain
21	chr1:180883000-180894600	Weak transcription	Right Ventricle	heart
22	chr1:180883000-180894800	Weak transcription	Colonic Mucosa	Colon
23	chr1:180883200-180885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:180883200-180892200	Weak transcription	Right Atrium	heart
25	chr1:180883200-180894200	Weak transcription	Brain Angular Gyrus	brain
26	chr1:180883400-180887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:180883400-180892600	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:180883600-180885600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:180883600-180885600	Weak transcription	Adipose Nuclei	Adipose
30	chr1:180883600-180885600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:180883600-180886000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:180883600-180886000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:180883600-180886200	Weak transcription	NHDF-Ad	bronchial
34	chr1:180883600-180886800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:180883600-180886800	Weak transcription	Left Ventricle	heart
36	chr1:180883600-180887200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:180883600-180887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:180883600-180888600	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:180883600-180891800	Weak transcription	HSMM	muscle
40	chr1:180883600-180892000	Weak transcription	Fetal Heart	heart
41	chr1:180883600-180892200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:180883600-180894200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr1:180883600-180894200	Weak transcription	Fetal Lung	lung
44	chr1:180883600-180894800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr1:180883600-180895000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr1:180884200-180886600	Strong transcription	Fetal Stomach	stomach
47	chr1:180884400-180886000	Strong transcription	Fetal Muscle Leg	muscle
48	chr1:180885000-180886800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr1:180885000-180887200	Strong transcription	Ovary	ovary
50	chr1:180885200-180885800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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