Variant report

Variant	rs6683252
Chromosome Location	chr1:180875705-180875706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10732273	1.00[AFR][1000 genomes]
rs1400038	1.00[AFR][1000 genomes]
rs1515960	1.00[AFR][1000 genomes]
rs2063849	1.00[AFR][1000 genomes]
rs2944260	1.00[AFR][1000 genomes]
rs2944263	1.00[AFR][1000 genomes]
rs3002120	1.00[AFR][1000 genomes]
rs3002122	0.87[AFR][1000 genomes]
rs3013635	1.00[AFR][1000 genomes]
rs3013636	1.00[AFR][1000 genomes]
rs3845408	1.00[AFR][1000 genomes]
rs3856061	1.00[AFR][1000 genomes]
rs4651076	1.00[AFR][1000 genomes]
rs4652534	1.00[AFR][1000 genomes]
rs7531753	1.00[AFR][1000 genomes]
rs7535885	1.00[AFR][1000 genomes]
rs7548808	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
3	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:180868000-180878600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:180868400-180878400	Weak transcription	Fetal Lung	lung
6	chr1:180868800-180879400	Weak transcription	Fetal Stomach	stomach
7	chr1:180868800-180880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:180868800-180881000	Weak transcription	Right Atrium	heart
9	chr1:180869200-180877400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:180869400-180875800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:180869600-180881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:180869800-180880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:180870800-180880600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:180875000-180879800	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:180875200-180875800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:180875400-180876000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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