Variant report

Variant	rs10733324
Chromosome Location	chr9:16866828-16866829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10435764	1.00[AMR][1000 genomes]
rs10733322	1.00[AMR][1000 genomes]
rs10756821	1.00[AMR][1000 genomes]
rs10756837	1.00[AMR][1000 genomes]
rs1416740	1.00[AMR][1000 genomes]
rs1832550	1.00[AMR][1000 genomes]
rs2095881	1.00[AMR][1000 genomes]
rs3861710	1.00[AMR][1000 genomes]
rs4246132	1.00[AMR][1000 genomes]
rs4327939	1.00[AMR][1000 genomes]
rs4961423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4961424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4961500	1.00[AMR][1000 genomes]
rs4961504	1.00[AMR][1000 genomes]
rs7032936	1.00[AMR][1000 genomes]
rs7039999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048224	1.00[AMR][1000 genomes]
rs7847859	1.00[AMR][1000 genomes]
rs7862159	1.00[AMR][1000 genomes]
rs7868036	1.00[AMR][1000 genomes]
rs8181207	1.00[AMR][1000 genomes]
rs9695691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16860800-16867800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:16862400-16868000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:16864200-16867600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:16864400-16867800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:16864400-16867800	Enhancers	NHDF-Ad	bronchial
6	chr9:16864400-16868000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:16864600-16867800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:16864800-16869200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:16864800-16869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:16865000-16867400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:16865000-16867400	Enhancers	Fetal Lung	lung
12	chr9:16865000-16867600	Weak transcription	Psoas Muscle	Psoas
13	chr9:16865000-16867800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:16865000-16867800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:16865000-16867800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:16865000-16867800	Enhancers	Osteobl	bone
17	chr9:16865000-16868000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:16865000-16868400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:16865000-16869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:16865000-16869400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:16865000-16872000	Active TSS	Stomach Smooth Muscle	stomach
22	chr9:16865200-16867000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr9:16865200-16868000	Weak transcription	Right Atrium	heart
24	chr9:16865200-16868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:16865400-16867400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:16865600-16867400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:16865600-16867800	Enhancers	NH-A	brain
28	chr9:16866000-16867600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:16866200-16867800	Enhancers	A549	lung
30	chr9:16866200-16868000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr9:16866400-16867000	Enhancers	Fetal Stomach	stomach
32	chr9:16866400-16867600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:16866400-16867800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr9:16866400-16867800	Enhancers	Fetal Kidney	kidney
35	chr9:16866400-16868200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:16866400-16871800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:16866600-16867000	Weak transcription	HSMMtube	muscle
38	chr9:16866600-16867600	Enhancers	Colon Smooth Muscle	Colon
39	chr9:16866600-16867800	Enhancers	Adipose Nuclei	Adipose
40	chr9:16866600-16867800	Enhancers	Rectal Smooth Muscle	rectum
41	chr9:16866600-16869600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:16866600-16872200	Active TSS	NHLF	lung
43	chr9:16866800-16867000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr9:16866800-16867000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:16866800-16867000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:16866800-16867000	Enhancers	HSMM	muscle
47	chr9:16866800-16867000	Enhancers	NHEK	skin
48	chr9:16866800-16867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:16866800-16867600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:16866800-16867600	Weak transcription	Ovary	ovary

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