Variant report

Variant	rs3861710
Chromosome Location	chr9:16887483-16887484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10435764	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10733322	1.00[AMR][1000 genomes]
rs10733324	1.00[AMR][1000 genomes]
rs10756821	0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10756837	1.00[AMR][1000 genomes]
rs1416740	1.00[AMR][1000 genomes]
rs1832550	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2095881	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4246132	1.00[AMR][1000 genomes]
rs4327939	1.00[AMR][1000 genomes]
rs4961423	1.00[AMR][1000 genomes]
rs4961424	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs4961500	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4961504	1.00[AMR][1000 genomes]
rs7032936	1.00[AMR][1000 genomes]
rs7039999	1.00[AMR][1000 genomes]
rs7048224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847859	1.00[AMR][1000 genomes]
rs7862159	1.00[AMR][1000 genomes]
rs7868036	1.00[AMR][1000 genomes]
rs8181207	1.00[AMR][1000 genomes]
rs9695691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16886200-16887600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:16886200-16888000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:16886400-16887600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:16886800-16888000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:16887000-16887800	Enhancers	Dnd41	blood
6	chr9:16887400-16888000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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