Variant report

Variant	rs10734052
Chromosome Location	chr10:18702824-18702825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18702337..18704574-chr10:18724311..18726686,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10734054	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10734056	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741057	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10741058	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10741059	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741060	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741061	0.90[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10764483	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10828623	1.00[JPT][hapmap]
rs10828653	0.90[AMR][1000 genomes]
rs10828679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014185	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014186	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12777508	0.80[CEU][hapmap]
rs1575835	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1575836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17690724	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1926026	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1998820	1.00[CHB][hapmap]
rs2148184	0.91[CEU][hapmap]
rs2209587	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2209588	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2209589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2209590	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4748464	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748466	0.81[CEU][hapmap]
rs4748468	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6415973	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6415974	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482408	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482409	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482410	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482412	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482437	0.86[AMR][1000 genomes]
rs7071123	0.84[AMR][1000 genomes]
rs7077248	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7084123	0.90[AMR][1000 genomes]
rs7095057	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7893279	1.00[CHB][hapmap]
rs7912753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7923938	1.00[CHB][hapmap]
rs982003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs983048	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs997264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10734052	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18713000	Weak transcription	Ovary	ovary
4	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:18699000-18703000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:18700000-18703600	Enhancers	Fetal Heart	heart
9	chr10:18700600-18703000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:18701000-18705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:18702600-18703000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:18702600-18703400	Enhancers	Liver	Liver
13	chr10:18702600-18703600	Enhancers	Pancreas	Pancrea
14	chr10:18702800-18703000	Enhancers	Right Ventricle	heart
15	chr10:18702800-18703200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:18702800-18703200	Enhancers	Colon Smooth Muscle	Colon
17	chr10:18702800-18703200	Enhancers	Lung	lung
18	chr10:18702800-18703200	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:18702800-18703600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:18702800-18703600	Enhancers	Left Ventricle	heart
21	chr10:18702800-18707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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