Variant report

Variant	rs4748466
Chromosome Location	chr10:18733293-18733294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10734052	0.81[CEU][hapmap]
rs12774837	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12784686	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1325989	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1926026	0.91[CEU][hapmap]
rs1998820	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1998821	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748467	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748468	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7893279	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7923938	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs912983	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4748466	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:18728400-18734200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18730000-18738600	Weak transcription	Ovary	ovary
4	chr10:18730200-18738000	Weak transcription	Left Ventricle	heart
5	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:18732400-18735000	Weak transcription	Right Ventricle	heart
7	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
8	chr10:18732600-18733400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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