Variant report

Variant	rs12774837
Chromosome Location	chr10:18744005-18744006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11596252	0.84[ASN][1000 genomes]
rs12784686	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325989	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998820	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998821	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748466	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4748467	0.86[EUR][1000 genomes]
rs4748468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893279	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923938	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12774837	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732000-18744200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
3	chr10:18739000-18744800	Weak transcription	Right Ventricle	heart
4	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
5	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18739800-18745400	Weak transcription	Left Ventricle	heart
7	chr10:18740600-18744200	Enhancers	Fetal Heart	heart
8	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
9	chr10:18742000-18745000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:18743400-18745200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18743400-18746200	Enhancers	Dnd41	blood
12	chr10:18743800-18745400	Enhancers	Placenta	Placenta
13	chr10:18744000-18744400	Enhancers	Ovary	ovary
14	chr10:18744000-18744600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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