Variant report

Variant	rs10734423
Chromosome Location	chr11:34275289-34275290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10768055	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768057	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836170	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836173	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10836174	0.95[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836175	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836176	0.95[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11032578	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs745281	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7935668	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7936567	0.95[CEU][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7940376	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7947371	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10734423	MPPED2	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34273000-34277800	Weak transcription	Aorta	Aorta
2	chr11:34273200-34276600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:34273200-34284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:34273200-34284600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:34273400-34275600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:34273400-34277400	Weak transcription	Fetal Lung	lung
7	chr11:34273800-34275400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:34273800-34275400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:34273800-34277200	Weak transcription	Left Ventricle	heart
10	chr11:34273800-34279400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:34274000-34275400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:34274000-34275400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:34274000-34275400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:34274000-34276600	Weak transcription	Placenta	Placenta
15	chr11:34274000-34277400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:34274000-34277400	Weak transcription	Right Atrium	heart
17	chr11:34274000-34278000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:34274000-34280600	Weak transcription	HepG2	liver
19	chr11:34274000-34283400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:34274000-34284600	Weak transcription	NHEK	skin
21	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
22	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
23	chr11:34274200-34277400	Weak transcription	Fetal Heart	heart
24	chr11:34274200-34277800	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:34274200-34287600	Weak transcription	HSMM	muscle
26	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:34274600-34276800	Weak transcription	Hela-S3	cervix
28	chr11:34274600-34283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:34274600-34283400	Weak transcription	Psoas Muscle	Psoas
30	chr11:34274600-34285000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:34274800-34278000	Weak transcription	Brain Substantia Nigra	brain
32	chr11:34274800-34284400	Weak transcription	Right Ventricle	heart
33	chr11:34275000-34276200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:34275200-34275600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:34275200-34275800	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:34275200-34275800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:34275200-34275800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:34275200-34283400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links