Variant report

Variant	rs7935668
Chromosome Location	chr11:34277082-34277083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34276940..34279788-chr11:34309195..34311703,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10734423	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10768055	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10768057	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10836170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10836173	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836174	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836175	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836176	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032578	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs745281	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7936567	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7940376	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34273000-34277800	Weak transcription	Aorta	Aorta
2	chr11:34273200-34284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:34273200-34284600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:34273400-34277400	Weak transcription	Fetal Lung	lung
5	chr11:34273800-34277200	Weak transcription	Left Ventricle	heart
6	chr11:34273800-34279400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:34274000-34277400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:34274000-34277400	Weak transcription	Right Atrium	heart
9	chr11:34274000-34278000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:34274000-34280600	Weak transcription	HepG2	liver
11	chr11:34274000-34283400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:34274000-34284600	Weak transcription	NHEK	skin
13	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
14	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
15	chr11:34274200-34277400	Weak transcription	Fetal Heart	heart
16	chr11:34274200-34277800	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:34274200-34287600	Weak transcription	HSMM	muscle
18	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:34274600-34283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:34274600-34283400	Weak transcription	Psoas Muscle	Psoas
21	chr11:34274600-34285000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:34274800-34278000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:34274800-34284400	Weak transcription	Right Ventricle	heart
24	chr11:34275200-34283400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:34275800-34283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:34276200-34284200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:34276800-34277200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr11:34276800-34278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:34277000-34277600	Weak transcription	Hela-S3	cervix

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