Variant report

Variant	rs10734442
Chromosome Location	chr11:36277778-36277779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36270328..36271830-chr11:36277590..36279604,2	K562	blood:
2	chr11:35638995..35641782-chr11:36276960..36279834,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179431	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10742365	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768201	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768202	0.96[AFR][1000 genomes]
rs10768203	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374372	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1374373	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405098	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2197600	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422184	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901671	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755444	0.83[ASN][1000 genomes]
rs4755447	0.98[AFR][1000 genomes]
rs4755448	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756301	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7106314	0.96[AFR][1000 genomes]
rs7110932	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945114	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
2	chr11:36271600-36280000	Weak transcription	Fetal Kidney	kidney
3	chr11:36271800-36277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:36274000-36279200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36275000-36277800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:36275200-36277800	Weak transcription	Fetal Lung	lung
7	chr11:36275200-36279000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:36275400-36277800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:36275400-36278400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:36275400-36280000	Weak transcription	Brain Angular Gyrus	brain
11	chr11:36275600-36278400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:36275600-36279000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:36275600-36279800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:36275600-36280200	Weak transcription	Fetal Brain Male	brain
15	chr11:36276400-36277800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:36276600-36280200	Weak transcription	A549	lung
17	chr11:36276800-36278400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:36276800-36278400	Weak transcription	HSMM	muscle
19	chr11:36276800-36278800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:36276800-36279000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:36276800-36294400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:36277000-36278200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:36277400-36277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:36277400-36278000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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