Variant report

Variant	rs10742365
Chromosome Location	chr11:36261344-36261345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10734442	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742367	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10768201	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10768203	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1374372	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1374373	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1405098	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197600	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2422184	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901671	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755444	0.88[ASN][1000 genomes]
rs4755448	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4756301	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110932	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945114	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36245200-36261400	Weak transcription	NHEK	skin
3	chr11:36249000-36262800	Weak transcription	Spleen	Spleen
4	chr11:36250800-36270600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:36252200-36270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
7	chr11:36253600-36262000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:36253800-36270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:36254400-36262000	Weak transcription	HSMM	muscle
10	chr11:36254400-36262000	Weak transcription	HSMMtube	muscle
11	chr11:36254400-36265400	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:36255000-36264600	Weak transcription	Fetal Stomach	stomach
13	chr11:36255000-36273000	Weak transcription	Brain Germinal Matrix	brain
14	chr11:36257600-36261800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:36257600-36270400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:36257800-36261400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:36257800-36271600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:36260400-36262400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:36260800-36262000	Enhancers	Brain Cingulate Gyrus	brain
20	chr11:36260800-36263000	Enhancers	Fetal Brain Female	brain
21	chr11:36260800-36263600	Enhancers	Fetal Brain Male	brain
22	chr11:36261200-36263000	Enhancers	Cortex derived primary cultured neurospheres	brain

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