Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1011388	0.94[ASN][1000 genomes]
rs1073451	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900192	0.94[ASN][1000 genomes]
rs1122801	0.90[ASN][1000 genomes]
rs11239400	0.86[ASN][1000 genomes]
rs11239406	0.92[ASN][1000 genomes]
rs11239411	0.98[ASN][1000 genomes]
rs11597509	0.88[ASN][1000 genomes]
rs12765621	0.81[EUR][1000 genomes]
rs1339748	0.86[ASN][1000 genomes]
rs1578205	0.87[ASN][1000 genomes]
rs1836467	0.99[ASN][1000 genomes]
rs1897891	0.99[ASN][1000 genomes]
rs1897892	0.99[ASN][1000 genomes]
rs2099172	0.82[EUR][1000 genomes]
rs2163190	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34650304	0.99[ASN][1000 genomes]
rs4948662	0.93[ASN][1000 genomes]
rs4948976	0.87[ASN][1000 genomes]
rs4948977	0.87[ASN][1000 genomes]
rs4948978	0.87[ASN][1000 genomes]
rs4948979	0.94[ASN][1000 genomes]
rs4948983	0.98[ASN][1000 genomes]
rs4948985	0.99[ASN][1000 genomes]
rs61852251	0.86[ASN][1000 genomes]
rs7079089	0.99[ASN][1000 genomes]
rs7099002	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71494765	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894766	0.93[ASN][1000 genomes]
rs7898089	0.94[ASN][1000 genomes]
rs7907957	0.87[ASN][1000 genomes]
rs7909803	0.94[ASN][1000 genomes]
rs7910028	0.94[ASN][1000 genomes]
rs7917466	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45774400-45776600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:45774400-45777200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:45774600-45776200	Enhancers	Fetal Intestine Large	intestine
4	chr10:45774600-45778400	Enhancers	Stomach Mucosa	stomach
5	chr10:45774800-45776200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:45775000-45776600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:45775200-45776200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:45775200-45776800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:45775400-45776600	Enhancers	Fetal Intestine Small	intestine
10	chr10:45775600-45776200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:45775600-45776600	Enhancers	Right Atrium	heart
12	chr10:45775800-45776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:45775800-45776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:45775800-45776200	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr10:45775800-45776400	Enhancers	Fetal Kidney	kidney
16	chr10:45775800-45776600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:45775800-45776800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:45776000-45776200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:45776000-45776800	Enhancers	K562	blood

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