Variant report

Variant	rs1578205
Chromosome Location	chr10:45748743-45748744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr10:45748698-45749125	GM10847	blood:	n/a	n/a
2	SPI1	chr10:45748733-45748950	GM12878	blood:	n/a	n/a
3	RELA	chr10:45748497-45749207	GM18505	blood:	n/a	n/a
4	SPI1	chr10:45748685-45749024	GM12878	blood:	n/a	n/a
5	BATF	chr10:45748704-45749071	GM12878	blood:	n/a	n/a
6	EP300	chr10:45748694-45748896	GM12878	blood:	n/a	n/a
7	RUNX3	chr10:45748673-45749090	GM12878	blood:	n/a	n/a
8	SPI1	chr10:45748704-45749026	GM12891	blood:	n/a	n/a
9	RELA	chr10:45748584-45749161	GM18951	blood:	n/a	n/a
10	MAX	chr10:45748709-45748829	GM12878	blood:	n/a	n/a
11	RELA	chr10:45748633-45749159	GM15510	blood:	n/a	n/a
12	SPI1	chr10:45748396-45749146	GM12878	blood:	n/a	n/a
13	SPI1	chr10:45748630-45749062	GM12891	blood:	n/a	n/a
14	MAX	chr10:45748585-45748746	A549	lung:	n/a	n/a
15	RELA	chr10:45748575-45749132	GM19099	blood:	n/a	n/a
16	BATF	chr10:45748704-45749077	GM12878	blood:	n/a	n/a
17	ELK1	chr10:45748618-45748803	GM12878	blood:	n/a	n/a
18	RELA	chr10:45748678-45749235	GM19193	blood:	n/a	n/a
19	RUNX3	chr10:45748634-45749107	GM12878	blood:	n/a	n/a
20	POLR2A	chr10:45748683-45748835	GM12878	blood:	n/a	n/a
21	RELA	chr10:45748598-45749258	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
OR6D1P	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1011388	0.90[ASN][1000 genomes]
rs1073450	0.87[ASN][1000 genomes]
rs1073451	0.87[ASN][1000 genomes]
rs10900192	0.90[ASN][1000 genomes]
rs1122801	0.96[ASN][1000 genomes]
rs11239400	0.98[ASN][1000 genomes]
rs11239406	0.87[ASN][1000 genomes]
rs11239411	0.86[ASN][1000 genomes]
rs11597509	0.88[ASN][1000 genomes]
rs1339748	0.98[ASN][1000 genomes]
rs1578204	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1836467	0.87[ASN][1000 genomes]
rs1897891	0.87[ASN][1000 genomes]
rs1897892	0.87[ASN][1000 genomes]
rs2153332	0.83[AMR][1000 genomes]
rs2163190	0.84[ASN][1000 genomes]
rs34650304	0.87[ASN][1000 genomes]
rs4948662	0.88[ASN][1000 genomes]
rs4948976	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948977	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948979	0.90[ASN][1000 genomes]
rs4948983	0.86[ASN][1000 genomes]
rs4948985	0.87[ASN][1000 genomes]
rs61852251	0.87[ASN][1000 genomes]
rs7079089	0.87[ASN][1000 genomes]
rs7086201	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7099002	0.86[ASN][1000 genomes]
rs71494765	0.87[ASN][1000 genomes]
rs7894766	0.88[ASN][1000 genomes]
rs7898089	0.90[ASN][1000 genomes]
rs7907957	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909803	0.90[ASN][1000 genomes]
rs7910028	0.90[ASN][1000 genomes]
rs7917466	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45745600-45750200	Weak transcription	Right Atrium	heart
2	chr10:45748000-45749400	Enhancers	GM12878-XiMat	blood
3	chr10:45748600-45749200	Enhancers	Primary B cells from peripheral blood	blood

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