Variant report

Variant	rs10734638
Chromosome Location	chr11:8927206-8927207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8925893..8928872-chr11:8930220..8933061,3	MCF-7	breast:
2	chr11:8903715..8906519-chr11:8925903..8928507,2	K562	blood:

Variant related genes	Relation type
ENSG00000166452	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10840127	0.94[CEU][hapmap]
rs10840129	0.94[CEU][hapmap]
rs11042099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1133833	1.00[CEU][hapmap]
rs16906056	0.88[CEU][hapmap]
rs16906614	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17337866	0.94[CEU][hapmap]
rs1811367	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2060157	0.89[EUR][1000 genomes]
rs2568029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2568078	0.95[EUR][1000 genomes]
rs2653558	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2653566	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653609	0.84[EUR][1000 genomes]
rs2653618	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2742483	0.87[EUR][1000 genomes]
rs2742502	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2742549	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2742553	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34152382	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34275210	0.81[EUR][1000 genomes]
rs34371023	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34418236	0.82[EUR][1000 genomes]
rs34581555	0.95[EUR][1000 genomes]
rs34769330	0.97[EUR][1000 genomes]
rs35503692	0.81[EUR][1000 genomes]
rs35563381	0.82[EUR][1000 genomes]
rs35580466	0.97[EUR][1000 genomes]
rs35909878	0.82[EUR][1000 genomes]
rs36094920	0.81[EUR][1000 genomes]
rs36100955	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36180552	0.82[EUR][1000 genomes]
rs3850934	0.92[CEU][hapmap]
rs3915868	0.89[CEU][hapmap]
rs4910068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7110170	0.81[EUR][1000 genomes]
rs7117900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127197	0.81[EUR][1000 genomes]
rs7950491	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10734638	C11orf17	cis	multi-tissue	Pritchard
rs10734638	C11orf17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8925200-8927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:8926000-8929400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:8926600-8928400	Enhancers	A549	lung
4	chr11:8926600-8929000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:8926600-8929000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:8926600-8929000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:8926600-8929000	Enhancers	HMEC	breast
8	chr11:8926600-8930000	Enhancers	NHEK	skin
9	chr11:8926800-8928400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:8926800-8929400	Enhancers	NHLF	lung
11	chr11:8927000-8928200	Enhancers	Placenta	Placenta
12	chr11:8927000-8928800	Enhancers	HSMMtube	muscle
13	chr11:8927000-8929000	Enhancers	Osteobl	bone
14	chr11:8927200-8927400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:8927200-8927400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:8927200-8927400	Flanking Active TSS	Hela-S3	cervix
17	chr11:8927200-8927400	Enhancers	NH-A	brain
18	chr11:8927200-8928800	Enhancers	HSMM	muscle
19	chr11:8927200-8929000	Enhancers	NHDF-Ad	bronchial
20	chr11:8927200-8931000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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