Variant report

Variant	rs7110170
Chromosome Location	chr11:9024655-9024656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:9024587-9024727	K562	blood:	n/a	n/a
2	MAZ	chr11:9024165-9026232	IMR90	lung:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119
3	MAX	chr11:9024576-9025381	NB4	blood:	n/a	n/a
4	ZNF263	chr11:9024405-9025735	HEK293-T-REx	kidney:	n/a	chr11:9025081-9025102 chr11:9024670-9024679 chr11:9025080-9025089

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:9024649-9024699	RPTEC	kidney:	n/a
2	chr11:9024649-9024699	A549	lung:	n/a
3	chr11:9024649-9024699	NHDF-neo	bronchial:	n/a
4	chr11:9024649-9024699	HCF	heart:	n/a
5	chr11:9024649-9024699	U87	brain:	n/a
6	chr11:9024649-9024699	SKMC	muscle:	n/a
7	chr11:9024649-9024699	HMEC	breast:	n/a
8	chr11:9024649-9024699	K562	blood:	n/a
9	chr11:9024649-9024699	AG04450	lung:	fetal
10	chr11:9024649-9024699	H1-hESC	embryonic stem cell:	embryo
11	chr11:9024649-9024699	PANC-1	pancreas:	n/a
12	chr11:9024649-9024699	GM12878	blood:	n/a
13	chr11:9024649-9024699	ECC-1	luminal epithelium:	n/a
14	chr11:9024649-9024699	LNCaP	prostate:	n/a
15	chr11:9024649-9024699	HEK293	kidney:	embryo
16	chr11:9024649-9024699	MCF-7	breast:	n/a
17	chr11:9024649-9024699	MCF10A-Er-Src	breast:	n/a
18	chr11:9024649-9024699	SK-N-SH	brain:	n/a
19	chr11:9024649-9024699	HepG2	liver:	n/a
20	chr11:9024649-9024699	SK-N-SH_RA	brain:	n/a
21	chr11:9024649-9024699	HCT-116	colon:	n/a
22	chr11:9024649-9024699	AG09309	skin:	n/a
23	chr11:9024649-9024699	Caco-2	colon:	n/a
24	chr11:9024649-9024699	BJ	skin:	n/a
25	chr11:9024649-9024699	GM19239	blood:	n/a
26	chr11:9024649-9024699	NT2-D1	testis:	n/a
27	chr11:9024649-9024699	NH-A	brain:	n/a
28	chr11:9024649-9024699	GM12892	blood:	n/a
29	chr11:9024649-9024699	AoSMC	blood vessel:	n/a
30	chr11:9024649-9024699	CMK	blood:	n/a
31	chr11:9024649-9024699	Jurkat	blood:	n/a
32	chr11:9024649-9024699	GM12891	blood:	n/a
33	chr11:9024649-9024699	BE2_C	brain:	n/a
34	chr11:9024649-9024699	SAEC	small airway:	n/a
35	chr11:9024649-9024699	ovcar-3	ovarian:	n/a
36	chr11:9024649-9024699	IMR90	lung:	fetal
37	chr11:9024649-9024699	NHBE	bronchial:	n/a
38	chr11:9024649-9024699	SK-N-MC	brain:	n/a
39	chr11:9024649-9024699	PFSK-1	brain:	n/a
40	chr11:9024649-9024699	HL-60	blood:	n/a
41	chr11:9024649-9024699	Hela-S3	cervix:	n/a
42	chr11:9024649-9024699	HUVEC	blood vessel:	n/a
43	chr11:9024649-9024699	HRPEpiC	eye:	n/a
44	chr11:9024649-9024699	HRE	kidney:	n/a
45	chr11:9024649-9024699	HCPEpiC	choroid plexus:	n/a
46	chr11:9024649-9024699	T-47D	breast:	n/a
47	chr11:9024649-9024699	HIPEpiC	eye:	n/a
48	chr11:9024649-9024699	PrEC	prostate:	n/a
49	chr11:9024649-9024699	HPAEpiC	pulmonary alveolar:	n/a
50	chr11:9024649-9024699	HAEpiC	amniotic membrane:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9022966..9025427-chr11:9154942..9157918,2	K562	blood:
2	chr11:8984349..8987280-chr11:9024480..9026486,3	K562	blood:
3	chr11:9023701..9026254-chr11:9404770..9407613,2	K562	blood:
4	chr11:9023067..9025427-chr11:9156418..9158861,2	K562	blood:
5	chr11:8996724..8999605-chr11:9022687..9025353,2	K562	blood:
6	chr11:8930312..8933119-chr11:9023959..9026944,2	K562	blood:
7	chr11:8930312..8934560-chr11:9023959..9026944,3	K562	blood:
8	chr11:8704228..8705954-chr11:9023702..9025627,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000253973	TF binding region
ENSG00000253973	CpG island
ENSG00000200983	Chromatin interaction
ENSG00000166452	Chromatin interaction
ENSG00000175348	Chromatin interaction
ENSG00000254860	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10734638	0.81[EUR][1000 genomes]
rs1136966	0.84[EUR][1000 genomes]
rs12796375	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1811367	0.81[EUR][1000 genomes]
rs1960181	0.81[EUR][1000 genomes]
rs1969627	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1984775	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1984790	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2060157	0.83[EUR][1000 genomes]
rs2568029	0.81[EUR][1000 genomes]
rs2568035	0.82[EUR][1000 genomes]
rs2568078	0.85[EUR][1000 genomes]
rs2653558	0.81[EUR][1000 genomes]
rs2653609	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2653618	0.80[EUR][1000 genomes]
rs2742483	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2742502	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34004082	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34371023	0.80[EUR][1000 genomes]
rs34769330	0.80[EUR][1000 genomes]
rs35580466	0.80[EUR][1000 genomes]
rs36100955	0.80[EUR][1000 genomes]
rs4061640	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910068	0.80[EUR][1000 genomes]
rs7108116	0.82[EUR][1000 genomes]
rs7936201	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7941341	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	esv3354735	chr11:9024401-9026949	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7110170	C11orf17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9023200-9025000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9023400-9024800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
3	chr11:9023400-9024800	Bivalent Enhancer	Fetal Thymus	thymus
4	chr11:9023600-9024800	Weak transcription	Pancreas	Pancrea
5	chr11:9023600-9024800	Enhancers	HSMMtube	muscle
6	chr11:9023800-9026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:9024000-9024800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:9024200-9024800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:9024200-9025000	Flanking Active TSS	NHLF	lung
10	chr11:9024400-9024800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:9024400-9024800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:9024400-9024800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:9024400-9024800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr11:9024400-9024800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr11:9024400-9024800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr11:9024400-9024800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr11:9024400-9024800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:9024400-9024800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
19	chr11:9024400-9024800	Bivalent Enhancer	Fetal Heart	heart
20	chr11:9024400-9024800	Bivalent Enhancer	Fetal Intestine Large	intestine
21	chr11:9024400-9024800	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr11:9024400-9024800	Bivalent Enhancer	Stomach Mucosa	stomach
23	chr11:9024400-9024800	Bivalent Enhancer	Thymus	Thymus
24	chr11:9024400-9025000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr11:9024400-9025000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:9024400-9025000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
27	chr11:9024400-9025000	Bivalent Enhancer	Liver	Liver
28	chr11:9024400-9025000	Flanking Active TSS	NHDF-Ad	bronchial
29	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
32	chr11:9024400-9025200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:9024400-9025200	Flanking Active TSS	K562	blood
34	chr11:9024400-9025400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
35	chr11:9024400-9025400	Flanking Active TSS	Osteobl	bone
36	chr11:9024400-9025600	Flanking Active TSS	NH-A	brain
37	chr11:9024400-9026200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
38	chr11:9024400-9026600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr11:9024600-9024800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:9024600-9024800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
41	chr11:9024600-9024800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:9024600-9024800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:9024600-9024800	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:9024600-9024800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr11:9024600-9024800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:9024600-9024800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:9024600-9024800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:9024600-9024800	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
49	chr11:9024600-9024800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
50	chr11:9024600-9024800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links