Variant report

Variant	rs1984775
Chromosome Location	chr11:9035929-9035930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9035751..9037447-chr11:9111301..9113742,2	MCF-7	breast:
2	chr11:9020957..9023609-chr11:9034116..9037224,3	K562	blood:
3	chr11:9031317..9033986-chr11:9035729..9038616,2	K562	blood:
4	chr11:9034413..9036493-chr11:9139269..9141678,2	K562	blood:
5	chr11:9029342..9032817-chr11:9034823..9038616,4	K562	blood:
6	chr11:9034962..9037892-chr11:9111101..9113164,2	MCF-7	breast:
7	chr11:9033737..9035999-chr11:9038793..9040438,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175356	Chromatin interaction
ENSG00000264984	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10840170	1.00[CHB][hapmap]
rs10840186	1.00[CHB][hapmap]
rs11042196	1.00[CHB][hapmap]
rs11042197	1.00[CHB][hapmap]
rs11042215	1.00[CHB][hapmap]
rs11042217	1.00[CHB][hapmap]
rs1133833	0.87[TSI][hapmap]
rs1136966	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607384	1.00[CHB][hapmap]
rs12794962	0.80[CEU][hapmap]
rs12796375	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960181	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969627	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984790	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2060157	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2133215	1.00[CHB][hapmap]
rs2173406	1.00[CHB][hapmap]
rs2568047	0.80[CEU][hapmap]
rs2653558	1.00[CHB][hapmap]
rs2653574	1.00[CHB][hapmap]
rs2653609	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2742483	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2742502	0.90[TSI][hapmap];0.84[AMR][1000 genomes]
rs34004082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34191466	1.00[ASN][1000 genomes]
rs35578021	1.00[ASN][1000 genomes]
rs4061640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370967	0.80[CEU][hapmap]
rs4910068	0.85[TSI][hapmap]
rs4910443	1.00[CHB][hapmap]
rs56277831	1.00[ASN][1000 genomes]
rs6486138	1.00[CHB][hapmap]
rs7108116	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7110170	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7113467	1.00[CHB][hapmap]
rs7114013	1.00[CHB][hapmap]
rs7125458	0.84[TSI][hapmap]
rs7129049	1.00[CHB][hapmap]
rs7130454	1.00[ASN][1000 genomes]
rs71476814	1.00[ASN][1000 genomes]
rs72856032	1.00[ASN][1000 genomes]
rs7396115	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7396130	1.00[CHB][hapmap]
rs7396541	1.00[CHB][hapmap]
rs7396840	1.00[CHB][hapmap]
rs7936201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941341	1.00[CHB][hapmap];0.96[GIH][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945759	1.00[CHB][hapmap]
rs7949022	1.00[CHB][hapmap]
rs7949349	1.00[CHB][hapmap]
rs7950491	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1984775	C11orf17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
2	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:9034600-9041600	Weak transcription	Gastric	stomach
4	chr11:9035200-9051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:9035400-9037400	Weak transcription	Esophagus	oesophagus

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