Variant report

Variant	rs11042215
Chromosome Location	chr11:9213283-9213284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10454487	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10840186	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10840188	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840189	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042179	0.81[EUR][1000 genomes]
rs11042190	0.82[AMR][1000 genomes]
rs11042191	0.82[AMR][1000 genomes]
rs11042192	0.82[AMR][1000 genomes]
rs11042196	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11042197	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042201	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042217	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11042224	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042228	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042230	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042231	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042232	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042233	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042240	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042241	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042242	1.00[ASN][1000 genomes]
rs11042246	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042253	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042257	0.87[EUR][1000 genomes]
rs11042259	0.87[EUR][1000 genomes]
rs11042268	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1136966	1.00[CHB][hapmap]
rs11607384	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11827186	0.86[EUR][1000 genomes]
rs12286621	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360767	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362997	0.87[EUR][1000 genomes]
rs12363839	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366113	0.82[AMR][1000 genomes]
rs17257379	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909215	0.81[EUR][1000 genomes]
rs1984775	1.00[CHB][hapmap]
rs2133215	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173406	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4061640	1.00[CHB][hapmap]
rs4627079	0.87[EUR][1000 genomes]
rs4910443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4910446	0.87[EUR][1000 genomes]
rs4910447	0.81[EUR][1000 genomes]
rs55948618	0.80[EUR][1000 genomes]
rs55962227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294473	1.00[ASN][1000 genomes]
rs60693427	1.00[ASN][1000 genomes]
rs6486138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6486204	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486209	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66554737	1.00[ASN][1000 genomes]
rs7103472	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7113467	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs7114013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7115283	0.88[EUR][1000 genomes]
rs7121753	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129049	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130400	1.00[ASN][1000 genomes]
rs72857949	0.81[EUR][1000 genomes]
rs72857989	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72857991	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72857993	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72857997	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72859608	0.92[EUR][1000 genomes]
rs72859676	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72859678	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72859693	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861335	0.87[EUR][1000 genomes]
rs72861360	0.81[EUR][1000 genomes]
rs7394454	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394869	1.00[ASN][1000 genomes]
rs7395631	1.00[ASN][1000 genomes]
rs7396115	1.00[CHB][hapmap]
rs7396130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7396541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7396840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7929621	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7936201	1.00[CHB][hapmap]
rs7936622	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938562	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939704	0.81[EUR][1000 genomes]
rs7940872	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941341	1.00[CHB][hapmap]
rs7945570	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945759	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7949022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7949349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645644	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
13	chr11:9200200-9224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:9200400-9216600	Weak transcription	Fetal Brain Male	brain
15	chr11:9200400-9223600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:9200400-9224200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:9200600-9214400	Weak transcription	K562	blood
18	chr11:9200600-9224800	Weak transcription	Lung	lung
19	chr11:9200600-9224800	Weak transcription	Psoas Muscle	Psoas
20	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:9201000-9230800	Weak transcription	HMEC	breast
23	chr11:9202400-9214400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:9202400-9224600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr11:9202400-9225000	Weak transcription	NHEK	skin
26	chr11:9202600-9224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:9202600-9225000	Weak transcription	Aorta	Aorta
28	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
29	chr11:9202800-9213400	Weak transcription	Hela-S3	cervix
30	chr11:9202800-9224200	Weak transcription	Pancreas	Pancrea
31	chr11:9202800-9224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:9203000-9213600	Weak transcription	NH-A	brain
33	chr11:9203000-9219800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:9203000-9224800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:9203200-9214800	Weak transcription	HepG2	liver
36	chr11:9203200-9224200	Weak transcription	NHLF	lung
37	chr11:9203200-9225000	Weak transcription	Right Ventricle	heart
38	chr11:9203200-9227200	Weak transcription	Right Atrium	heart
39	chr11:9203600-9225200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:9203800-9214400	Weak transcription	Left Ventricle	heart
41	chr11:9205400-9214600	Weak transcription	HUVEC	blood vessel
42	chr11:9207000-9213400	Strong transcription	Primary T cells from cord blood	blood
43	chr11:9207400-9214600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:9207400-9225200	Weak transcription	Gastric	stomach
45	chr11:9207600-9214800	Weak transcription	Fetal Heart	heart
46	chr11:9208000-9216000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:9208000-9219200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr11:9208200-9215800	Strong transcription	Fetal Stomach	stomach
49	chr11:9208400-9213600	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:9208600-9213800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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