Variant report

Variant	rs72859608
Chromosome Location	chr11:9199044-9199045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9197229..9199544-chr11:9481637..9484255,2	MCF-7	breast:
2	chr11:9169410..9173680-chr11:9196051..9200398,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000184014	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10454487	0.81[EUR][1000 genomes]
rs10840186	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10840188	0.85[EUR][1000 genomes]
rs10840189	0.85[EUR][1000 genomes]
rs11042201	0.82[AMR][1000 genomes]
rs11042215	0.92[EUR][1000 genomes]
rs11042220	0.83[AFR][1000 genomes]
rs11042224	0.90[EUR][1000 genomes]
rs11042228	0.84[EUR][1000 genomes]
rs11042230	0.82[EUR][1000 genomes]
rs11042231	0.84[EUR][1000 genomes]
rs11042232	0.84[EUR][1000 genomes]
rs11042233	0.84[EUR][1000 genomes]
rs11042240	0.82[EUR][1000 genomes]
rs11042241	0.83[EUR][1000 genomes]
rs11042246	0.83[EUR][1000 genomes]
rs11042253	0.82[EUR][1000 genomes]
rs11042257	0.81[EUR][1000 genomes]
rs11042259	0.81[EUR][1000 genomes]
rs11827186	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12286621	0.84[EUR][1000 genomes]
rs12360767	0.89[EUR][1000 genomes]
rs12362997	0.81[EUR][1000 genomes]
rs12363839	0.84[EUR][1000 genomes]
rs17257379	0.82[EUR][1000 genomes]
rs2133215	0.91[EUR][1000 genomes]
rs2173406	0.82[AMR][1000 genomes]
rs4627079	0.81[EUR][1000 genomes]
rs4910446	0.81[EUR][1000 genomes]
rs55962227	0.83[EUR][1000 genomes]
rs56294473	0.94[AFR][1000 genomes]
rs6486204	0.90[EUR][1000 genomes]
rs6486209	0.88[EUR][1000 genomes]
rs67890540	0.86[AFR][1000 genomes]
rs7115283	0.82[EUR][1000 genomes]
rs7121753	0.81[EUR][1000 genomes]
rs7129049	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72859676	0.84[EUR][1000 genomes]
rs72859678	0.84[EUR][1000 genomes]
rs72859693	0.82[EUR][1000 genomes]
rs72861335	0.81[EUR][1000 genomes]
rs7394454	0.89[EUR][1000 genomes]
rs7936622	0.82[EUR][1000 genomes]
rs7938562	0.83[EUR][1000 genomes]
rs7940872	0.82[EUR][1000 genomes]
rs7945570	0.82[EUR][1000 genomes]
rs7945759	0.81[EUR][1000 genomes]
rs7949349	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9645644	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
3	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
5	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
6	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:9172200-9199600	Weak transcription	Gastric	stomach
9	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:9174000-9199400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:9180000-9199600	Weak transcription	Aorta	Aorta
15	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:9182600-9199600	Weak transcription	Fetal Brain Male	brain
18	chr11:9184200-9208200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:9187600-9201800	Weak transcription	Pancreas	Pancrea
22	chr11:9191600-9199600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:9191800-9199200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:9191800-9199400	Weak transcription	HMEC	breast
25	chr11:9192200-9199200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:9192200-9199600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:9192400-9199600	Weak transcription	Spleen	Spleen
28	chr11:9193000-9199600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:9193600-9199400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:9193800-9202600	Weak transcription	Fetal Heart	heart
31	chr11:9194000-9203400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:9194200-9199200	Weak transcription	Psoas Muscle	Psoas
33	chr11:9195200-9199400	Weak transcription	Hela-S3	cervix
34	chr11:9195200-9199400	Weak transcription	K562	blood
35	chr11:9195400-9199400	Weak transcription	GM12878-XiMat	blood
36	chr11:9196200-9200400	Strong transcription	HUVEC	blood vessel
37	chr11:9196200-9203800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:9196400-9203200	Strong transcription	NHLF	lung
39	chr11:9196400-9204000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:9196600-9203000	Strong transcription	HSMM	muscle
41	chr11:9196800-9208200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:9197000-9202800	Strong transcription	Fetal Kidney	kidney
43	chr11:9197000-9203000	Strong transcription	Primary B cells from cord blood	blood
44	chr11:9197000-9203000	Strong transcription	NH-A	brain
45	chr11:9197000-9203200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:9197000-9203200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:9197000-9203800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:9197000-9205400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:9197000-9210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:9197200-9201000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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