Variant report

Variant	rs11042201
Chromosome Location	chr11:9179074-9179075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10840170	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840171	1.00[ASN][1000 genomes]
rs10840186	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042179	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042190	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042191	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042192	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042196	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042197	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042215	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042224	0.81[EUR][1000 genomes]
rs11607384	1.00[ASN][1000 genomes]
rs11827186	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360767	0.80[EUR][1000 genomes]
rs12366113	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909215	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133215	0.82[EUR][1000 genomes]
rs2173406	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910443	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948618	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57514354	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486204	0.81[EUR][1000 genomes]
rs67988043	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113467	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129049	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72857949	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857989	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857991	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857993	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857997	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72859608	0.82[AMR][1000 genomes]
rs7394454	0.80[EUR][1000 genomes]
rs7396130	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7396541	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7396840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945759	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949022	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949349	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv526778	chr11:9159739-9185077	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9153000-9179800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9157000-9180000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:9158000-9183200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:9159600-9179400	Strong transcription	Primary T cells from cord blood	blood
6	chr11:9159800-9183400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
8	chr11:9161400-9179200	Strong transcription	Fetal Stomach	stomach
9	chr11:9161400-9181000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:9162000-9191200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
13	chr11:9167800-9187600	Strong transcription	Placenta	Placenta
14	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
15	chr11:9169400-9186400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
17	chr11:9169800-9179400	Strong transcription	Brain Cingulate Gyrus	brain
18	chr11:9171000-9182000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:9171600-9181800	Weak transcription	Fetal Brain Male	brain
20	chr11:9171800-9180400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:9171800-9191400	Weak transcription	Psoas Muscle	Psoas
22	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:9172000-9181400	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:9172200-9199600	Weak transcription	Gastric	stomach
27	chr11:9172400-9182000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:9172600-9180400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:9173200-9179400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:9173200-9179800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:9173200-9180200	Strong transcription	HSMM	muscle
33	chr11:9173400-9182200	Weak transcription	Spleen	Spleen
34	chr11:9173400-9191000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:9173600-9180400	Weak transcription	HMEC	breast
37	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:9173800-9179200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:9173800-9180200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:9173800-9181400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:9174000-9180400	Weak transcription	Fetal Intestine Large	intestine
42	chr11:9174000-9181200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:9174000-9181400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:9174000-9181400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:9174000-9182000	Weak transcription	Right Ventricle	heart
47	chr11:9174000-9182200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:9174000-9182200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:9174000-9184000	Weak transcription	Fetal Thymus	thymus
50	chr11:9174000-9184600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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