Variant report

Variant	rs11042224
Chromosome Location	chr11:9222764-9222765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9213578..9215314-chr11:9219832..9222855,3	K562	blood:
2	chr11:9221651..9223373-chr11:9226919..9229349,3	K562	blood:
3	chr11:9222096..9225077-chr8:101946856..101949796,2	K562	blood:

Variant related genes	Relation type
ENSG00000184014	Chromatin interaction
ENSG00000164924	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10454487	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840186	0.84[EUR][1000 genomes]
rs10840188	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840189	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042179	0.83[AMR][1000 genomes]
rs11042190	0.85[AMR][1000 genomes]
rs11042191	0.85[AMR][1000 genomes]
rs11042192	0.85[AMR][1000 genomes]
rs11042197	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11042201	0.81[EUR][1000 genomes]
rs11042215	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042217	1.00[ASN][1000 genomes]
rs11042228	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042230	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042231	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042233	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042240	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042241	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042242	1.00[ASN][1000 genomes]
rs11042246	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042253	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042257	0.89[EUR][1000 genomes]
rs11042259	0.89[EUR][1000 genomes]
rs11042268	0.81[EUR][1000 genomes]
rs11827186	0.83[EUR][1000 genomes]
rs12286621	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360767	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362997	0.89[EUR][1000 genomes]
rs12363839	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366113	0.85[AMR][1000 genomes]
rs17257379	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909215	0.81[AMR][1000 genomes]
rs2133215	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173406	0.81[EUR][1000 genomes]
rs4627079	0.89[EUR][1000 genomes]
rs4910443	0.81[AMR][1000 genomes]
rs4910446	0.89[EUR][1000 genomes]
rs4910447	0.83[EUR][1000 genomes]
rs55948618	0.81[AMR][1000 genomes]
rs55962227	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294473	1.00[ASN][1000 genomes]
rs60693427	1.00[ASN][1000 genomes]
rs6486204	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486209	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66554737	1.00[ASN][1000 genomes]
rs7103472	0.81[EUR][1000 genomes]
rs7113467	0.81[EUR][1000 genomes]
rs7114013	0.81[EUR][1000 genomes]
rs7115283	0.90[EUR][1000 genomes]
rs7115373	0.81[EUR][1000 genomes]
rs7121753	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129049	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130400	1.00[ASN][1000 genomes]
rs72850512	0.81[EUR][1000 genomes]
rs72857949	0.81[AMR][1000 genomes]
rs72857989	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72857991	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72857993	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72857997	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72859608	0.90[EUR][1000 genomes]
rs72859676	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72859678	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72859693	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861335	0.89[EUR][1000 genomes]
rs72861360	0.83[EUR][1000 genomes]
rs7394454	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394869	1.00[ASN][1000 genomes]
rs7395631	1.00[ASN][1000 genomes]
rs7396130	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7396541	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7396840	0.81[AMR][1000 genomes]
rs7929621	1.00[ASN][1000 genomes]
rs7936622	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938562	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939704	0.83[EUR][1000 genomes]
rs7940872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945570	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945759	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7949349	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645644	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
11	chr11:9200200-9224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:9200400-9223600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:9200400-9224200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:9200600-9224800	Weak transcription	Lung	lung
15	chr11:9200600-9224800	Weak transcription	Psoas Muscle	Psoas
16	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:9201000-9230800	Weak transcription	HMEC	breast
19	chr11:9202400-9224600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:9202400-9225000	Weak transcription	NHEK	skin
21	chr11:9202600-9224200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:9202600-9225000	Weak transcription	Aorta	Aorta
23	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
24	chr11:9202800-9224200	Weak transcription	Pancreas	Pancrea
25	chr11:9202800-9224800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:9203000-9224800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:9203200-9224200	Weak transcription	NHLF	lung
28	chr11:9203200-9225000	Weak transcription	Right Ventricle	heart
29	chr11:9203200-9227200	Weak transcription	Right Atrium	heart
30	chr11:9203600-9225200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:9207400-9225200	Weak transcription	Gastric	stomach
32	chr11:9209400-9225200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:9210000-9224200	Weak transcription	Brain Anterior Caudate	brain
34	chr11:9210200-9224200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:9210800-9224600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:9211200-9224800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:9211200-9225000	Weak transcription	Spleen	Spleen
38	chr11:9212000-9224800	Weak transcription	Fetal Intestine Large	intestine
39	chr11:9212800-9224800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:9213000-9225200	Weak transcription	Fetal Intestine Small	intestine
41	chr11:9213200-9224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:9213200-9225000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:9214000-9225000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:9214000-9227600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:9214800-9224800	Weak transcription	Fetal Thymus	thymus
46	chr11:9215200-9223000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:9215200-9224200	Weak transcription	Brain Germinal Matrix	brain
48	chr11:9215200-9224600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:9215200-9224600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:9215200-9224800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links