Variant report

Variant	rs4061640
Chromosome Location	chr11:9029451-9029452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9029342..9032817-chr11:9034823..9038616,4	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10840170	1.00[CHB][hapmap]
rs10840186	1.00[CHB][hapmap]
rs11042196	1.00[CHB][hapmap]
rs11042197	1.00[CHB][hapmap]
rs11042215	1.00[CHB][hapmap]
rs11042217	1.00[CHB][hapmap]
rs1136966	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607384	1.00[CHB][hapmap]
rs12794962	0.80[CEU][hapmap]
rs12796375	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960181	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969627	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2060157	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2133215	1.00[CHB][hapmap]
rs2173406	1.00[CHB][hapmap]
rs2568047	0.80[CEU][hapmap]
rs2568078	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2653558	1.00[CHB][hapmap]
rs2653574	1.00[CHB][hapmap]
rs2653609	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2742483	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2742502	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34004082	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34191466	1.00[ASN][1000 genomes]
rs35578021	1.00[ASN][1000 genomes]
rs3850934	1.00[CHB][hapmap]
rs4370967	0.80[CEU][hapmap]
rs4910443	1.00[CHB][hapmap]
rs56277831	1.00[ASN][1000 genomes]
rs6486138	1.00[CHB][hapmap]
rs7108116	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7110170	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7113467	1.00[CHB][hapmap]
rs7114013	1.00[CHB][hapmap]
rs7129049	1.00[CHB][hapmap]
rs7130454	1.00[ASN][1000 genomes]
rs71476814	1.00[ASN][1000 genomes]
rs72856032	1.00[ASN][1000 genomes]
rs7396115	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7396130	1.00[CHB][hapmap]
rs7396541	1.00[CHB][hapmap]
rs7396840	1.00[CHB][hapmap]
rs7936201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941341	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945759	1.00[CHB][hapmap]
rs7949022	1.00[CHB][hapmap]
rs7949349	1.00[CHB][hapmap]
rs7950491	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4061640	C11orf17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9026200-9034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
3	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach

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