Variant report

Variant	esv3354735
Chromosome Location	chr11:9024401-9026949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:9025315-9025342	K562	blood:	n/a	n/a
2	ATF1	chr11:9025404-9025661	K562	blood:	n/a	chr11:9025584-9025598
3	ATF3	chr11:9025863-9026252	H1-hESC	embryonic stem cell:	n/a	chr11:9026110-9026130 chr11:9025957-9025966
4	BACH1	chr11:9025110-9026394	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr11:9024913-9025717	K562	blood:	n/a	chr11:9025201-9025217 chr11:9025271-9025287
6	BHLHE40	chr11:9025986-9026094	K562	blood:	n/a	n/a
7	CBX3	chr11:9025039-9025739	K562	blood:	n/a	n/a
8	CCNT2	chr11:9025073-9025813	K562	blood:	n/a	chr11:9025276-9025285
9	CCNT2	chr11:9026047-9026116	K562	blood:	n/a	n/a
10	CEBPB	chr11:9024217-9024482	HepG2	liver:	n/a	chr11:9024365-9024376 chr11:9024251-9024264
11	CEBPB	chr11:9024226-9024516	IMR90	lung:	n/a	chr11:9024365-9024376 chr11:9024251-9024264
12	CHD2	chr11:9025304-9025756	K562	blood:	n/a	chr11:9025568-9025575
13	CHD2	chr11:9025158-9025518	H1-hESC	embryonic stem cell:	n/a	n/a
14	CHD2	chr11:9026392-9026411	H1-hESC	embryonic stem cell:	n/a	n/a
15	CREB1	chr11:9025236-9025795	H1-hESC	embryonic stem cell:	n/a	n/a
16	CREB1	chr11:9025245-9025767	GM12878	blood:	n/a	n/a
17	CREB1	chr11:9025310-9025878	A549	lung:	n/a	n/a
18	CREB1	chr11:9025325-9025837	HepG2	liver:	n/a	n/a
19	CREB1	chr11:9025404-9025701	A549	lung:	n/a	n/a
20	CREB1	chr11:9025298-9025884	K562	blood:	n/a	n/a
21	CTBP2	chr11:9025816-9026376	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr11:9025300-9025450	WERI-Rb-1	eye:	n/a	n/a
23	CTCF	chr11:9025340-9025490	SK-N-SH_RA	brain:	n/a	n/a
24	CTCF	chr11:9025320-9025470	AG04449	skin:	n/a	n/a
25	CTCF	chr11:9025380-9025530	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr11:9025880-9026030	AG04449	skin:	n/a	chr11:9025998-9026011
27	CTCF	chr11:9025320-9025470	HCPEpiC	choroid plexus:	n/a	n/a
28	CTCF	chr11:9025440-9025590	Caco-2	colon:	n/a	n/a
29	CTCF	chr11:9025300-9025450	GM12865	blood:	n/a	n/a
30	CTCF	chr11:9025380-9025530	HBMEC	blood vessel:	n/a	n/a
31	CTCF	chr11:9024340-9024490	HPAF	blood vessel:	n/a	n/a
32	CTCF	chr11:9025320-9025470	GM12874	blood:	n/a	n/a
33	CTCF	chr11:9025380-9025530	GM12873	blood:	n/a	n/a
34	CTCF	chr11:9025300-9025450	HUVEC	blood vessel:	n/a	n/a
35	CTCF	chr11:9025900-9026050	SK-N-SH_RA	brain:	n/a	chr11:9025998-9026011
36	E2F6	chr11:9024972-9026595	H1-hESC	embryonic stem cell:	n/a	chr11:9026285-9026294 chr11:9025568-9025575 chr11:9025293-9025302
37	E2F6	chr11:9025107-9025854	A549	lung:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
38	E2F6	chr11:9025019-9025997	K562	blood:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
39	E2F6	chr11:9024930-9025937	A549	lung:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
40	E2F6	chr11:9025010-9026481	H1-hESC	embryonic stem cell:	n/a	chr11:9026285-9026294 chr11:9025568-9025575 chr11:9025293-9025302
41	E2F6	chr11:9025024-9026170	K562	blood:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
42	E2F6	chr11:9025138-9025803	K562	blood:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
43	EGR1	chr11:9025675-9025902	K562	blood:	n/a	chr11:9025783-9025798 chr11:9025784-9025797 chr11:9025719-9025729 chr11:9025785-9025795
44	EGR1	chr11:9025591-9025926	K562	blood:	n/a	chr11:9025783-9025798 chr11:9025784-9025797 chr11:9025719-9025729 chr11:9025785-9025795
45	EP300	chr11:9025487-9025562	GM12878	blood:	n/a	n/a
46	ETS1	chr11:9025119-9025681	K562	blood:	n/a	n/a
47	FOXP2	chr11:9025286-9025760	PFSK-1	brain:	n/a	n/a
48	GABPA	chr11:9025261-9025962	K562	blood:	n/a	chr11:9025953-9025962
49	GTF2B	chr11:9025405-9025725	K562	blood:	n/a	n/a
50	GTF2F1	chr11:9025362-9025597	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:9026055-9026105	T-47D	breast:	n/a
2	chr11:9026055-9026105	T-47D	breast:	n/a
3	chr11:9025730-9025780	GM12878	blood:	n/a
4	chr11:9024649-9024699	HRCEpiC	kidney:	n/a
5	chr11:9026055-9026105	ProgFib	skin:	n/a
6	chr11:9025730-9025780	ovcar-3	ovarian:	n/a
7	chr11:9026820-9026870	Jurkat	blood:	n/a
8	chr11:9025767-9025817	AG09309	skin:	n/a
9	chr11:9025767-9025817	PrEC	prostate:	n/a
10	chr11:9024649-9024699	MCF-7	breast:	n/a
11	chr11:9026308-9026358	HEEpiC	esophagus:	n/a
12	chr11:9025298-9025348	GM19239	blood:	n/a
13	chr11:9026820-9026870	SK-N-MC	brain:	n/a
14	chr11:9025767-9025817	T-47D	breast:	n/a
15	chr11:9025298-9025348	NH-A	brain:	n/a
16	chr11:9025298-9025348	HCPEpiC	choroid plexus:	n/a
17	chr11:9026308-9026358	Jurkat	blood:	n/a
18	chr11:9025730-9025780	HMEC	breast:	n/a
19	chr11:9025298-9025348	HCM	heart:	n/a
20	chr11:9025767-9025817	H1-hESC	embryonic stem cell:	embryo
21	chr11:9026055-9026105	Hepatocyte	liver:	n/a
22	chr11:9026308-9026358	HRE	kidney:	n/a
23	chr11:9026820-9026870	BE2_C	brain:	n/a
24	chr11:9026308-9026358	NT2-D1	testis:	n/a
25	chr11:9025767-9025817	U87	brain:	n/a
26	chr11:9025730-9025780	SKMC	muscle:	n/a
27	chr11:9026820-9026870	AG09319	gingival:	n/a
28	chr11:9026820-9026870	HCT-116	colon:	n/a
29	chr11:9025730-9025780	NHBE	bronchial:	n/a
30	chr11:9024649-9024699	SKMC	muscle:	n/a
31	chr11:9025298-9025348	HCT-116	colon:	n/a
32	chr11:9026820-9026870	U87	brain:	n/a
33	chr11:9026308-9026358	HAEpiC	amniotic membrane:	n/a
34	chr11:9024649-9024699	HL-60	blood:	n/a
35	chr11:9025767-9025817	NH-A	brain:	n/a
36	chr11:9026308-9026358	PANC-1	pancreas:	n/a
37	chr11:9025502-9025552	LNCaP	prostate:	n/a
38	chr11:9026820-9026870	HRPEpiC	eye:	n/a
39	chr11:9025298-9025348	HIPEpiC	eye:	n/a
40	chr11:9026055-9026105	HPAEpiC	pulmonary alveolar:	n/a
41	chr11:9025298-9025348	CMK	blood:	n/a
42	chr11:9025298-9025348	MCF10A-Er-Src	breast:	n/a
43	chr11:9026308-9026358	AG09319	gingival:	n/a
44	chr11:9026055-9026105	HRCEpiC	kidney:	n/a
45	chr11:9025502-9025552	Caco-2	colon:	n/a
46	chr11:9026308-9026358	HEK293	kidney:	embryo
47	chr11:9025767-9025817	Hepatocyte	liver:	n/a
48	chr11:9025502-9025552	NT2-D1	testis:	n/a
49	chr11:9025730-9025780	MCF-7	breast:	n/a
50	chr11:9026820-9026870	LNCaP	prostate:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:8984349..8987280-chr11:9024480..9026486,3	K562	blood:
2	chr11:9023067..9025427-chr11:9156418..9158861,2	K562	blood:
3	chr11:8930312..8933119-chr11:9023959..9026944,2	K562	blood:
4	chr11:8713787..8716446-chr11:9025116..9027150,2	K562	blood:
5	chr11:8704228..8705954-chr11:9023702..9025627,2	K562	blood:
6	chr11:8996724..8999605-chr11:9022687..9025353,2	K562	blood:
7	chr11:8930312..8934560-chr11:9023959..9026944,3	K562	blood:
8	chr11:9023701..9026254-chr11:9404770..9407613,2	K562	blood:
9	chr11:9026840..9029249-chr11:9032131..9034982,2	MCF-7	breast:
10	chr11:9022966..9025427-chr11:9154942..9157918,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKIP1-2	chr11:9025709-9026090	ENSG00000253973.2

Variant related genes	Relation type
NRIP3	TF binding region
ENSG00000253973	TF binding region
NRIP3	CpG island
ENSG00000253973	CpG island
ENSG00000166444	chromatin interactions
ENSG00000175348	chromatin interactions
ENSG00000200983	chromatin interactions
ENSG00000166452	chromatin interactions
ENSG00000254665	chromatin interactions
ENSG00000205339	chromatin interactions
ENSG00000254860	chromatin interactions
ENSG00000166441	chromatin interactions

Extended variants
information (count: 104 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:104 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10769981	chr11:9024460-9024461	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs535111158	chr11:9024478-9024479	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs533969227	chr11:9024487-9024488	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
4	rs115633575	chr11:9024538-9024539	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
5	rs145726065	chr11:9024557-9024558	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
6	rs563690471	chr11:9024597-9024598	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
7	rs6486060	chr11:9024630-9024631	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs7110170	chr11:9024655-9024656	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs78671649	chr11:9024717-9024718	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
10	rs192864621	chr11:9024756-9024757	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
11	rs185334970	chr11:9024776-9024777	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
12	rs560620168	chr11:9024787-9024788	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
13	rs576756007	chr11:9024805-9024806	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
14	rs190261030	chr11:9024843-9024844	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
15	rs66630602	chr11:9024852-9024853	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs549322642	chr11:9024862-9024863	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
17	rs6486061	chr11:9024867-9024868	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs76213297	chr11:9024896-9024897	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	mRNA abundance
19	rs377743382	chr11:9024941-9024942	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
20	rs74052316	chr11:9024993-9024994	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs566250015	chr11:9025009-9025010	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
22	rs7131552	chr11:9025012-9025013	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
23	rs138141062	chr11:9025027-9025028	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
24	rs192522105	chr11:9025030-9025031	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
25	rs374250722	chr11:9025036-9025037	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
26	rs537552216	chr11:9025068-9025069	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
27	rs557346940	chr11:9025076-9025077	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
28	rs373997864	chr11:9025083-9025084	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs577214494	chr11:9025102-9025103	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs545272670	chr11:9025127-9025128	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs558607019	chr11:9025184-9025185	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs572326467	chr11:9025198-9025199	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs540791479	chr11:9025296-9025297	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs560756513	chr11:9025342-9025343	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs35985526	chr11:9025364-9025365	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs373925753	chr11:9025378-9025379	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs376668179	chr11:9025388-9025389	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs371268274	chr11:9025399-9025400	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs370257003	chr11:9025421-9025422	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs200147777	chr11:9025443-9025444	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
41	rs543158034	chr11:9025491-9025492	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs563281640	chr11:9025518-9025519	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs532048082	chr11:9025519-9025520	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
44	rs552816611	chr11:9025520-9025521	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
45	rs566216923	chr11:9025521-9025522	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs377510441	chr11:9025522-9025523	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs548761634	chr11:9025551-9025552	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
48	rs568674923	chr11:9025558-9025559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
49	rs3763906	chr11:9025572-9025573	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
50	rs368757128	chr11:9025578-9025579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Dysmorphic features	22052655	CNVD
Intellectual disability	22052655	CNVD
Obesity	22052655	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:403 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9022600-9024600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:9022800-9024600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:9023000-9024600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:9023000-9024600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:9023200-9024600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:9023200-9024600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
7	chr11:9023200-9024600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:9023200-9024600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:9023200-9024600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:9023200-9024600	Enhancers	HMEC	breast
11	chr11:9023200-9024600	Enhancers	HSMM	muscle
12	chr11:9023200-9024600	Enhancers	HUVEC	blood vessel
13	chr11:9023200-9024600	Enhancers	NHEK	skin
14	chr11:9023200-9025000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:9023400-9024600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:9023400-9024800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
17	chr11:9023400-9024800	Bivalent Enhancer	Fetal Thymus	thymus
18	chr11:9023600-9024600	Weak transcription	Gastric	stomach
19	chr11:9023600-9024600	Weak transcription	Spleen	Spleen
20	chr11:9023600-9024800	Weak transcription	Pancreas	Pancrea
21	chr11:9023600-9024800	Enhancers	HSMMtube	muscle
22	chr11:9023800-9024600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:9023800-9026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr11:9024000-9024800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:9024200-9024600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
26	chr11:9024200-9024600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
27	chr11:9024200-9024800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:9024200-9025000	Flanking Active TSS	NHLF	lung
29	chr11:9024400-9024600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
30	chr11:9024400-9024600	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr11:9024400-9024600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:9024400-9024600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
33	chr11:9024400-9024600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:9024400-9024600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
35	chr11:9024400-9024600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr11:9024400-9024600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:9024400-9024600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:9024400-9024600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
39	chr11:9024400-9024600	Bivalent Enhancer	Brain Anterior Caudate	brain
40	chr11:9024400-9024600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
41	chr11:9024400-9024600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
42	chr11:9024400-9024600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:9024400-9024600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr11:9024400-9024600	Enhancers	Placenta	Placenta
45	chr11:9024400-9024600	Enhancers	Stomach Smooth Muscle	stomach
46	chr11:9024400-9024800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:9024400-9024800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:9024400-9024800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:9024400-9024800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
50	chr11:9024400-9024800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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