Variant report

Variant	rs7131552
Chromosome Location	chr11:9025012-9025013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:9024920-9025998	H1-neurons	neurons:	n/a	chr11:9025870-9025883 chr11:9025512-9025522
2	MAX	chr11:9024952-9025997	A549	lung:	n/a	n/a
3	E2F6	chr11:9024930-9025937	A549	lung:	n/a	chr11:9025568-9025575 chr11:9025293-9025302
4	UBTF	chr11:9025009-9025564	K562	blood:	n/a	n/a
5	MAX	chr11:9024938-9026279	K562	blood:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119 chr11:9026257-9026266
6	BHLHE40	chr11:9024913-9025717	K562	blood:	n/a	chr11:9025201-9025217 chr11:9025271-9025287
7	SIN3A	chr11:9024856-9025708	H1-hESC	embryonic stem cell:	n/a	chr11:9025194-9025207
8	UBTF	chr11:9024724-9025712	K562	blood:	n/a	n/a
9	POLR2A	chr11:9024893-9025889	H1-neurons	neurons:	n/a	n/a
10	E2F6	chr11:9025010-9026481	H1-hESC	embryonic stem cell:	n/a	chr11:9026285-9026294 chr11:9025568-9025575 chr11:9025293-9025302
11	MAZ	chr11:9024165-9026232	IMR90	lung:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119
12	MAX	chr11:9024576-9025381	NB4	blood:	n/a	n/a
13	POLR2A	chr11:9024949-9025717	IMR90	lung:	n/a	n/a
14	JUND	chr11:9024969-9025413	H1-hESC	embryonic stem cell:	n/a	chr11:9025217-9025227 chr11:9025218-9025226
15	MAX	chr11:9024992-9026277	SK-N-SH	brain:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119 chr11:9026257-9026266
16	E2F6	chr11:9024972-9026595	H1-hESC	embryonic stem cell:	n/a	chr11:9026285-9026294 chr11:9025568-9025575 chr11:9025293-9025302
17	POLR2A	chr11:9024992-9025808	K562	blood:	n/a	n/a
18	ZNF263	chr11:9024405-9025735	HEK293-T-REx	kidney:	n/a	chr11:9025081-9025102 chr11:9024670-9024679 chr11:9025080-9025089
19	TCF12	chr11:9024979-9025726	ECC-1	luminal epithelium:	n/a	n/a
20	NR2F2	chr11:9024690-9025230	K562	blood:	n/a	n/a
21	TBP	chr11:9024942-9026175	H1-hESC	embryonic stem cell:	n/a	n/a
22	MAX	chr11:9024954-9026016	SK-N-SH	brain:	n/a	n/a
23	ZNF143	chr11:9024981-9025281	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr11:9024936-9026060	H1-neurons	neurons:	n/a	n/a
25	MAX	chr11:9024983-9026197	HepG2	liver:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119

No.	Distal block	Cell Line	Cell type
1	chr11:9022966..9025427-chr11:9154942..9157918,2	K562	blood:
2	chr11:8984349..8987280-chr11:9024480..9026486,3	K562	blood:
3	chr11:9023701..9026254-chr11:9404770..9407613,2	K562	blood:
4	chr11:9023067..9025427-chr11:9156418..9158861,2	K562	blood:
5	chr11:8996724..8999605-chr11:9022687..9025353,2	K562	blood:
6	chr11:8930312..8933119-chr11:9023959..9026944,2	K562	blood:
7	chr11:8930312..8934560-chr11:9023959..9026944,3	K562	blood:
8	chr11:8704228..8705954-chr11:9023702..9025627,2	K562	blood:

Variant related genes	Relation type
ENSG00000253973	TF binding region
ENSG00000200983	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000254860	Chromatin interaction
ENSG00000175348	Chromatin interaction
ENSG00000166444	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000166452	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	esv3354735	chr11:9024401-9026949	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9023800-9026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
3	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
4	chr11:9024400-9025200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
5	chr11:9024400-9025200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:9024400-9025200	Flanking Active TSS	K562	blood
7	chr11:9024400-9025400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
8	chr11:9024400-9025400	Flanking Active TSS	Osteobl	bone
9	chr11:9024400-9025600	Flanking Active TSS	NH-A	brain
10	chr11:9024400-9026200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
11	chr11:9024400-9026600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr11:9024600-9025200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
14	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:9024600-9025200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
17	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
18	chr11:9024600-9025200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
20	chr11:9024600-9025200	Enhancers	Gastric	stomach
21	chr11:9024600-9025200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
22	chr11:9024600-9025200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr11:9024600-9025200	Enhancers	Spleen	Spleen
24	chr11:9024600-9025200	Flanking Bivalent TSS/Enh	A549	lung
25	chr11:9024600-9025400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
26	chr11:9024600-9025400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:9024600-9025400	Enhancers	Lung	lung
28	chr11:9024600-9025400	Bivalent/Poised TSS	Psoas Muscle	Psoas
29	chr11:9024600-9025400	Bivalent Enhancer	Small Intestine	intestine
30	chr11:9024600-9025600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:9024600-9025600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr11:9024600-9025600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:9024600-9025600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
34	chr11:9024600-9025600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
35	chr11:9024600-9025600	Flanking Active TSS	HUVEC	blood vessel
36	chr11:9024600-9025600	Flanking Bivalent TSS/Enh	NHEK	skin
37	chr11:9024600-9026000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr11:9024600-9026200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:9024600-9026200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
40	chr11:9024600-9026200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:9024600-9026200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr11:9024600-9026200	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr11:9024600-9026400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr11:9024600-9026400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
45	chr11:9024600-9026400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr11:9024600-9026400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:9024600-9026400	Bivalent/Poised TSS	Fetal Brain Female	brain
48	chr11:9024600-9026600	Bivalent Enhancer	Fetal Brain Male	brain
49	chr11:9024600-9027000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
50	chr11:9024800-9025200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links