Variant report

Variant	rs10735624
Chromosome Location	chr9:71354184-71354185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71318947..71321633-chr9:71353997..71355633,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107242	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10781142	0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs11143594	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap]
rs2039426	0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2151415	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2184116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3945288	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4745232	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7026347	0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7040168	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7048356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963707	0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893415	chr9:71347988-71364351	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71342600-71354600	Enhancers	Fetal Intestine Large	intestine
2	chr9:71343400-71363000	Weak transcription	GM12878-XiMat	blood
3	chr9:71343800-71357200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:71347200-71354600	Weak transcription	K562	blood
5	chr9:71347400-71357800	Weak transcription	Primary B cells from cord blood	blood
6	chr9:71348000-71354400	Weak transcription	Pancreas	Pancrea
7	chr9:71348200-71359000	Weak transcription	Lung	lung
8	chr9:71348400-71354600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:71350000-71356600	Weak transcription	Aorta	Aorta
10	chr9:71350400-71354600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:71351000-71354400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:71351000-71354600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:71351000-71354600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:71351000-71370600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:71351200-71354600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:71351200-71354600	Weak transcription	Right Ventricle	heart
17	chr9:71351200-71355800	Enhancers	Fetal Intestine Small	intestine
18	chr9:71351200-71360000	Weak transcription	Gastric	stomach
19	chr9:71352400-71365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:71352600-71354600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:71353000-71354600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr9:71353000-71355000	Enhancers	Stomach Mucosa	stomach
23	chr9:71353200-71355000	Enhancers	Fetal Heart	heart
24	chr9:71353400-71354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:71353400-71354400	Enhancers	Duodenum Mucosa	Duodenum
26	chr9:71353400-71354600	Enhancers	HepG2	liver
27	chr9:71353400-71355200	Enhancers	Right Atrium	heart
28	chr9:71353400-71356600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:71353600-71354400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:71353600-71355200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr9:71353600-71355600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr9:71353800-71354600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr9:71353800-71356200	Weak transcription	Colonic Mucosa	Colon
34	chr9:71354000-71354400	Weak transcription	Left Ventricle	heart
35	chr9:71354000-71355400	Enhancers	Primary hematopoietic stem cells	blood
36	chr9:71354000-71356400	Weak transcription	Small Intestine	intestine

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