Variant report

Variant	rs4745232
Chromosome Location	chr9:71346869-71346870
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71345141..71347064-chr9:71360683..71362254,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119614	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10735624	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10781142	0.87[JPT][hapmap]
rs11143594	0.82[CEU][hapmap]
rs2039426	0.87[JPT][hapmap]
rs2151415	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs2184116	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs3945288	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7026347	0.87[JPT][hapmap]
rs7040168	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7048356	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs963707	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv2757339	chr9:71291107-71353743	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759693	chr9:71291107-71353743	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71322000-71349400	Weak transcription	Aorta	Aorta
2	chr9:71337000-71350600	Weak transcription	Gastric	stomach
3	chr9:71342600-71347400	Strong transcription	Primary B cells from cord blood	blood
4	chr9:71342600-71354600	Enhancers	Fetal Intestine Large	intestine
5	chr9:71343400-71363000	Weak transcription	GM12878-XiMat	blood
6	chr9:71343800-71347800	Weak transcription	Right Atrium	heart
7	chr9:71343800-71357200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:71344600-71354000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:71344800-71350400	Enhancers	Fetal Intestine Small	intestine
10	chr9:71345400-71350200	Enhancers	Stomach Mucosa	stomach
11	chr9:71345400-71350800	Weak transcription	Colonic Mucosa	Colon
12	chr9:71345600-71352800	Enhancers	Fetal Heart	heart
13	chr9:71345800-71347000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr9:71346000-71347000	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr9:71346000-71347200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:71346000-71347200	Enhancers	K562	blood
17	chr9:71346200-71347400	Flanking Active TSS	HepG2	liver
18	chr9:71346200-71348200	Enhancers	Small Intestine	intestine
19	chr9:71346400-71347000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:71346400-71347000	Enhancers	Left Ventricle	heart
21	chr9:71346400-71347200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:71346400-71348200	Enhancers	Lung	lung
23	chr9:71346600-71347400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:71346600-71347600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:71346600-71348000	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr9:71346600-71352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:71346600-71353400	Weak transcription	Psoas Muscle	Psoas
28	chr9:71346800-71348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:71346800-71348000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:71346800-71348200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:71346800-71350600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:71346800-71350600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:71346800-71350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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