Variant report

Variant	rs10735646
Chromosome Location	chr9:79078038-79078039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79077933..79079433-chr9:79321608..79323340,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10114264	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10119532	0.82[JPT][hapmap]
rs10121699	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs10124695	0.82[EUR][1000 genomes]
rs10781363	0.88[ASN][1000 genomes]
rs10869780	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11788095	0.80[EUR][1000 genomes]
rs1535845	0.82[EUR][1000 genomes]
rs1961995	0.82[CHB][hapmap]
rs2002423	0.82[CHB][hapmap]
rs2490572	0.82[CHB][hapmap]
rs2490586	0.81[EUR][1000 genomes]
rs2501920	0.81[EUR][1000 genomes]
rs2501930	0.82[CHB][hapmap]
rs3739516	0.83[JPT][hapmap]
rs4526423	0.83[JPT][hapmap]
rs4745544	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs4745551	0.91[JPT][hapmap]
rs4745552	0.82[JPT][hapmap]
rs638410	0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs6560519	0.85[EUR][1000 genomes]
rs6560522	0.87[CHB][hapmap]
rs7847608	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs7858497	0.86[JPT][hapmap]
rs785936	0.82[JPT][hapmap]
rs7871849	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075200-79085200	Weak transcription	Esophagus	oesophagus
2	chr9:79075200-79087200	Weak transcription	Spleen	Spleen
3	chr9:79075400-79078400	Enhancers	Fetal Brain Male	brain
4	chr9:79075400-79079800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:79075400-79080400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:79075400-79086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:79075400-79086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:79075400-79087200	Weak transcription	Colonic Mucosa	Colon
9	chr9:79075400-79089800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:79075400-79090200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:79075400-79101000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:79075600-79078600	Weak transcription	Small Intestine	intestine
13	chr9:79075600-79080400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:79075600-79083800	Enhancers	Primary B cells from peripheral blood	blood
15	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
16	chr9:79075800-79078800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:79075800-79079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:79075800-79080400	Weak transcription	Fetal Thymus	thymus
19	chr9:79075800-79080600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:79076000-79078200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:79076000-79078200	Weak transcription	Gastric	stomach
22	chr9:79076000-79083600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:79076000-79084000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr9:79076000-79087400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:79076000-79088000	Weak transcription	NHDF-Ad	bronchial
26	chr9:79076200-79078200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:79076200-79079000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr9:79076200-79079200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:79076200-79079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:79076200-79079400	Weak transcription	NH-A	brain
31	chr9:79076200-79080600	Weak transcription	NHLF	lung
32	chr9:79076200-79080800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr9:79076200-79083000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:79076200-79083000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:79076400-79080400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:79076800-79078800	Flanking Active TSS	GM12878-XiMat	blood
37	chr9:79076800-79087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:79077200-79078200	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr9:79077200-79078400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr9:79077200-79078600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:79077400-79078200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:79077400-79078400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:79077400-79078600	Strong transcription	HMEC	breast
44	chr9:79077400-79079000	Genic enhancers	Muscle Satellite Cultured Cells	--
45	chr9:79077400-79079400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr9:79077400-79083200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:79077600-79078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:79077600-79078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:79077600-79078600	Enhancers	Stomach Mucosa	stomach
50	chr9:79077600-79079200	Genic enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links